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    TDP1 tyrosyl-DNA phosphodiesterase 1 [ Bos taurus (cattle) ]

    Gene ID: 517053, updated on 8-Sep-2018

    Summary

    Official Symbol
    TDP1provided by VGNC
    Official Full Name
    tyrosyl-DNA phosphodiesterase 1provided by VGNC
    Primary source
    VGNC:VGNC:35713
    See related
    BGD:BT19046; Ensembl:ENSBTAG00000013138
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See TDP1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 10 NC_037337.1 (101635773..101708751)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 10 AC_000167.1 (102693122..102766296)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101907299 Neighboring gene EF-hand calcium binding domain 11 Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene uncharacterized LOC101907747 Neighboring gene collagen alpha-1(X) chain-like Neighboring gene uncharacterized LOC112448536

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    tyrosyl-DNA phosphodiesterase 1
    NP_001180084.1
    XP_024853282.1
    XP_024853283.1
    XP_024853284.1
    XP_024853285.1
    XP_024853286.1
    XP_024853287.1
    XP_024853288.1
    XP_024853289.1
    XP_024853290.1
    XP_024853291.1
    XP_024853292.1
    XP_024853293.1
    XP_024853294.1
    XP_024853295.1
    XP_024853296.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193155.1NP_001180084.1  tyrosyl-DNA phosphodiesterase 1

      See identical proteins and their annotated locations for NP_001180084.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000010
      UniProtKB/TrEMBL
      F1MST1
      Related
      ENSBTAP00000017463.5, ENSBTAT00000017463.5
      Conserved Domains (1) summary
      pfam06087
      Location:170586
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      101635773..101708751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024997520.1XP_024853288.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

      Conserved Domains (1) summary
      pfam06087
      Location:170552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    2. XM_024997518.1XP_024853286.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

      Conserved Domains (1) summary
      pfam06087
      Location:170552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    3. XM_024997517.1XP_024853285.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

      Conserved Domains (1) summary
      pfam06087
      Location:170552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    4. XM_024997516.1XP_024853284.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

      Conserved Domains (1) summary
      pfam06087
      Location:170552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    5. XM_024997525.1XP_024853293.1  tyrosyl-DNA phosphodiesterase 1 isoform X8

      Conserved Domains (1) summary
      pfam06087
      Location:170586
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    6. XM_024997519.1XP_024853287.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

      Conserved Domains (1) summary
      pfam06087
      Location:170552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    7. XM_024997514.1XP_024853282.1  tyrosyl-DNA phosphodiesterase 1 isoform X1

      Conserved Domains (1) summary
      pfam06087
      Location:205587
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    8. XM_024997515.1XP_024853283.1  tyrosyl-DNA phosphodiesterase 1 isoform X2

      Conserved Domains (1) summary
      pfam06087
      Location:205552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    9. XM_024997521.1XP_024853289.1  tyrosyl-DNA phosphodiesterase 1 isoform X4

      Conserved Domains (1) summary
      pfam06087
      Location:205552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    10. XM_024997522.1XP_024853290.1  tyrosyl-DNA phosphodiesterase 1 isoform X5

      Conserved Domains (1) summary
      pfam06087
      Location:205552
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    11. XM_024997527.1XP_024853295.1  tyrosyl-DNA phosphodiesterase 1 isoform X10

      Conserved Domains (1) summary
      pfam06087
      Location:205495
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    12. XM_024997528.1XP_024853296.1  tyrosyl-DNA phosphodiesterase 1 isoform X10

      Conserved Domains (1) summary
      pfam06087
      Location:205495
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    13. XM_024997523.1XP_024853291.1  tyrosyl-DNA phosphodiesterase 1 isoform X6

      Conserved Domains (1) summary
      pfam06087
      Location:205636
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    14. XM_024997526.1XP_024853294.1  tyrosyl-DNA phosphodiesterase 1 isoform X9

      Conserved Domains (1) summary
      pfam06087
      Location:205551
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
    15. XM_024997524.1XP_024853292.1  tyrosyl-DNA phosphodiesterase 1 isoform X7

      Conserved Domains (1) summary
      pfam06087
      Location:205621
      Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

    RNA

    1. XR_003036620.1 RNA Sequence

    2. XR_003036621.1 RNA Sequence

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