Format

Send to:

Choose Destination
    • Showing Current items.

    CARF calcium responsive transcription factor [ Bos taurus (cattle) ]

    Gene ID: 509072, updated on 2-Oct-2018

    Summary

    Official Symbol
    CARFprovided by VGNC
    Official Full Name
    calcium responsive transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:26765
    See related
    BGD:BT22005; Ensembl:ENSBTAG00000016000
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ALS2CR8
    Orthologs

    Genomic context

    See CARF in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 2 NC_037329.1 (91230515..91310808)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 2 AC_000159.1 (91658159..91726299)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1 like Neighboring gene WD repeat domain 12 Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene neurobeachin like 1 Neighboring gene cytochrome P450, family 20, subfamily A, polypeptide 1

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    cellular response to calcium ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to potassium ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of transcription from RNA polymerase II promoter in response to calcium ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    calcium-responsive transcription factor
    Names
    amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8
    amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032294.1NP_001027465.1  calcium-responsive transcription factor

      See identical proteins and their annotated locations for NP_001027465.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021831
      UniProtKB/Swiss-Prot
      Q58CW6
      Related
      ENSBTAP00000021288.5, ENSBTAT00000021288.5
      Conserved Domains (1) summary
      pfam15299
      Location:250480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      91230515..91310808
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025000250.1XP_024856018.1  calcium-responsive transcription factor isoform X2

      Conserved Domains (1) summary
      pfam15299
      Location:250432
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    2. XM_025000235.1XP_024856003.1  calcium-responsive transcription factor isoform X1

      Conserved Domains (1) summary
      pfam15299
      Location:250480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    3. XM_025000231.1XP_024855999.1  calcium-responsive transcription factor isoform X1

      Conserved Domains (1) summary
      pfam15299
      Location:250480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    4. XM_025000243.1XP_024856011.1  calcium-responsive transcription factor isoform X1

      Conserved Domains (1) summary
      pfam15299
      Location:250480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    5. XM_025000249.1XP_024856017.1  calcium-responsive transcription factor isoform X1

      Conserved Domains (1) summary
      pfam15299
      Location:250480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    6. XM_025000252.1XP_024856020.1  calcium-responsive transcription factor isoform X4

      Conserved Domains (1) summary
      pfam15299
      Location:113343
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    7. XM_025000254.1XP_024856022.1  calcium-responsive transcription factor isoform X4

      Conserved Domains (1) summary
      pfam15299
      Location:113343
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    8. XM_025000261.1XP_024856029.1  calcium-responsive transcription factor isoform X5

      Conserved Domains (1) summary
      pfam15299
      Location:1200
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    9. XM_025000240.1XP_024856008.1  calcium-responsive transcription factor isoform X1

      Conserved Domains (1) summary
      pfam15299
      Location:250480
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    10. XM_025000251.1XP_024856019.1  calcium-responsive transcription factor isoform X3

      Conserved Domains (1) summary
      pfam15299
      Location:151381
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
    11. XM_025000259.1XP_024856027.1  calcium-responsive transcription factor isoform X4

      Conserved Domains (1) summary
      pfam15299
      Location:113343
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    RNA

    1. XR_003037667.1 RNA Sequence

    Support Center