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    Treml1 triggering receptor expressed on myeloid cells-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501096, updated on 21-Jul-2018

    Summary

    Official Symbol
    Treml1provided by RGD
    Official Full Name
    triggering receptor expressed on myeloid cells-like 1provided by RGD
    Primary source
    RGD:1565175
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565175
    Expression
    Biased expression in Spleen (RPKM 61.7), Lung (RPKM 9.1) and 1 other tissue See more
    Orthologs

    Genomic context

    See Treml1 in Genome Data Viewer
    Location:
    9q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (14597172..14603622, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (13521172..13523578, complement)

    Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene nuclear transcription factor Y subunit alpha Neighboring gene triggering receptor expressed on myeloid cells 2 Neighboring gene uncharacterized LOC102548435

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    calcium-mediated signaling ISO
    Inferred from Sequence Orthology
    more info
     
    platelet activation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    platelet alpha granule ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    trem-like transcript 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192001.1NP_001178930.1  trem-like transcript 1 protein precursor

      Status: PROVISIONAL

      Source sequence(s)
      AABR03070469, AABR03071999
      Conserved Domains (2) summary
      smart00410
      Location:22121
      IG_like; Immunoglobulin like
      cl11960
      Location:24106
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

      Range
      14597172..14603622 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000077.1 Alternate Rn_Celera

      Range
      10409481..10411887 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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