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    Gipc3 GIPC PDZ domain containing family, member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500789, updated on 21-Jul-2018

    Summary

    Official Symbol
    Gipc3provided by RGD
    Official Full Name
    GIPC PDZ domain containing family, member 3provided by RGD
    Primary source
    RGD:1563255
    See related
    Ensembl:ENSRNOG00000020593
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563255
    Expression
    Biased expression in Heart (RPKM 6.3), Adrenal (RPKM 3.3) and 9 other tissues See more
    Orthologs

    Genomic context

    See Gipc3 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (11245160..11253080)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (11412757..11417446)

    Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene hypothetical protein LOC690617 Neighboring gene major facilitator superfamily domain containing 12 Neighboring gene uncharacterized LOC102552827 Neighboring gene high mobility group 20 B Neighboring gene thromboxane A2 receptor Neighboring gene cactin, spliceosome C complex subunit Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 gamma

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    PDZ domain-containing protein GIPC3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109282.1NP_001102752.1  PDZ domain-containing protein GIPC3

      See identical proteins and their annotated locations for NP_001102752.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474029
      UniProtKB/TrEMBL
      D3ZEK6
      Related
      ENSRNOP00000027951.3, ENSRNOT00000027951.4
      Conserved Domains (1) summary
      cd00992
      Location:95168
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

      Range
      11245160..11253080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017595042.1XP_017450531.1  PDZ domain-containing protein GIPC3 isoform X1

    Alternate Rn_Celera

    Genomic

    1. AC_000075.1 Alternate Rn_Celera

      Range
      6565154..6569858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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