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    Fam126a family with sequence similarity 126, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499975, updated on 2-Oct-2018

    Summary

    Official Symbol
    Fam126aprovided by RGD
    Official Full Name
    family with sequence similarity 126, member Aprovided by RGD
    Primary source
    RGD:1562906
    See related
    Ensembl:ENSRNOG00000010517
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Drctnnb1a; RGD1562906
    Expression
    Biased expression in Heart (RPKM 131.5), Adrenal (RPKM 105.1) and 9 other tissues See more
    Orthologs

    Genomic context

    See Fam126a in Genome Data Viewer
    Location:
    4q11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (7661710..7770179)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (7670158..7731263)

    Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene hypercoagulability-related protein-like Neighboring gene kelch-like family member 7 Neighboring gene uncharacterized LOC108350648 Neighboring gene SUMO-conjugating enzyme UBC9 pseudogene Neighboring gene uncharacterized LOC103692024 Neighboring gene uncharacterized LOC102555004 Neighboring gene uncharacterized LOC100909675

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    myelination IEA
    Inferred from Electronic Annotation
    more info
     
    myelination ISO
    Inferred from Sequence Orthology
    more info
     
    phosphatidylinositol phosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phosphatidylinositol phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    protein localization to plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    neuron projection IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    hyccin
    Names
    down-regulated by Ctnnb1, A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191969.1NP_001178898.1  hyccin

      Status: PROVISIONAL

      Source sequence(s)
      AABR07059190
      UniProtKB/TrEMBL
      D4AE31
      Related
      ENSRNOP00000014023.3, ENSRNOT00000014023.5
      Conserved Domains (1) summary
      pfam09790
      Location:22330
      Hyccin; Hyccin

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

      Range
      7661710..7770179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017592774.1XP_017448263.1  hyccin isoform X2

      UniProtKB/TrEMBL
      A0A0G2K3C7
      Related
      ENSRNOP00000072584.1, ENSRNOT00000080229.1
    2. XM_006235961.3XP_006236023.1  hyccin isoform X1

      Conserved Domains (1) summary
      pfam09790
      Location:22330
      Hyccin; Hyccin

    Alternate Rn_Celera

    Genomic

    1. AC_000072.1 Alternate Rn_Celera

      Range
      6746100..6805912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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