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    Ccdc106 coiled-coil domain containing 106 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499071, updated on 21-Jul-2018

    Summary

    Official Symbol
    Ccdc106provided by RGD
    Official Full Name
    coiled-coil domain containing 106provided by RGD
    Primary source
    RGD:1566222
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566222
    Expression
    Biased expression in Brain (RPKM 28.1), Heart (RPKM 16.9) and 9 other tissues See more
    Orthologs

    Genomic context

    See Ccdc106 in Genome Data Viewer
    Location:
    1q12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (72331232..72338373, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (76197686..76204845)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene Epsin 1 Neighboring gene U2 small nuclear RNA auxiliary factor 2 Neighboring gene zinc finger protein 580 Neighboring gene zinc finger protein 865

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 106

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      72331232..72338373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589965.1XP_017445454.1  coiled-coil domain-containing protein 106 isoform X1

    2. XM_017589966.1XP_017445455.1  coiled-coil domain-containing protein 106 isoform X2

    3. XM_017589967.1XP_017445456.1  coiled-coil domain-containing protein 106 isoform X2

    4. XM_017589970.1XP_017445459.1  coiled-coil domain-containing protein 106 isoform X3

    5. XM_017589971.1XP_017445460.1  coiled-coil domain-containing protein 106 isoform X3

    6. XM_017589972.1XP_017445461.1  coiled-coil domain-containing protein 106 isoform X3

    7. XM_017589969.1XP_017445458.1  coiled-coil domain-containing protein 106 isoform X3

    8. XM_017589968.1XP_017445457.1  coiled-coil domain-containing protein 106 isoform X3

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      68332195..68340446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017587910.1XP_017443399.1  coiled-coil domain-containing protein 106 isoform X2

    2. XM_017587908.1XP_017443397.1  coiled-coil domain-containing protein 106 isoform X1

    3. XM_017587909.1XP_017443398.1  coiled-coil domain-containing protein 106 isoform X2

    4. XM_017587916.1XP_017443405.1  coiled-coil domain-containing protein 106 isoform X4

      UniProtKB/TrEMBL
      D4AAV8
    5. XM_017587912.1XP_017443401.1  coiled-coil domain-containing protein 106 isoform X3

    6. XM_017587914.1XP_017443403.1  coiled-coil domain-containing protein 106 isoform X3

    7. XM_017587915.1XP_017443404.1  coiled-coil domain-containing protein 106 isoform X3

    8. XM_017587911.1XP_017443400.1  coiled-coil domain-containing protein 106 isoform X3

    9. XM_017587913.1XP_017443402.1  coiled-coil domain-containing protein 106 isoform X3

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