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    Il17rd interleukin 17 receptor D [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498576, updated on 21-Jul-2018

    Summary

    Official Symbol
    Il17rdprovided by RGD
    Official Full Name
    interleukin 17 receptor Dprovided by RGD
    Primary source
    RGD:1565237
    See related
    Ensembl:ENSRNOG00000021966
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565237
    Expression
    Biased expression in Kidney (RPKM 71.7), Lung (RPKM 57.9) and 9 other tissues See more
    Orthologs

    Genomic context

    See Il17rd in Genome Data Viewer
    Location:
    16p16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (2670471..2737271)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (2642868..2709804)

    Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene host cell factor C1 regulator 1-like Neighboring gene adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 Neighboring gene HESX homeobox 1 Neighboring gene uncharacterized LOC102548056 Neighboring gene Rho guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC108353070

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    interleukin-17 receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cytokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191937.1NP_001178866.1  interleukin-17 receptor D precursor

      Status: PROVISIONAL

      Source sequence(s)
      AABR07024518, AABR07024519
      UniProtKB/TrEMBL
      D3ZGQ0
      Related
      ENSRNOP00000031556.1, ENSRNOT00000030102.2
      Conserved Domains (2) summary
      pfam08357
      Location:356512
      SEFIR; SEFIR domain
      pfam16742
      Location:48169
      IL17R_D_N; N-terminus of interleukin 17 receptor D

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

      Range
      2670471..2737271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006252636.3XP_006252698.1  interleukin-17 receptor D isoform X1

      Conserved Domains (2) summary
      pfam08357
      Location:349505
      SEFIR; SEFIR domain
      pfam16742
      Location:48169
      IL17R_D_N; N-terminus of interleukin 17 receptor D

    Alternate Rn_Celera

    Genomic

    1. AC_000084.1 Alternate Rn_Celera

      Range
      2194794..2255588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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