Format

Send to:

Choose Destination
    • Showing Current items.

    dnajc3 DnaJ heat shock protein family (Hsp40) member C3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496977, updated on 20-Jun-2018

    Summary

    Symbol
    dnajc3provided by Xenbase
    Full Name
    DnaJ heat shock protein family (Hsp40) member C3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-997043
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See dnajc3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (118822121..118919709, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668233.1 (64039792..64137394)

    Chromosome 2 - NC_030678.1Genomic Context describing neighboring genes Neighboring gene RNA-directed DNA polymerase homolog Neighboring gene heparan sulfate 6-O-sulfotransferase 3 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene DAZ interacting zinc finger protein 1 Neighboring gene claudin 10 Neighboring gene ATP binding cassette subfamily C member 4

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 3
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011485.1NP_001011485.1  dnaJ homolog subfamily C member 3 precursor

      See identical proteins and their annotated locations for NP_001011485.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088814
      UniProtKB/TrEMBL
      Q5I009
      Conserved Domains (2) summary
      sd00006
      Location:3765
      TPR; TPR repeat [structural motif]
      cl26002
      Location:47366
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030678.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      118822121..118919709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956881.2XP_012812335.1  dnaJ homolog subfamily C member 3 isoform X1

      See identical proteins and their annotated locations for XP_012812335.1

      UniProtKB/TrEMBL
      Q28EB5
      Conserved Domains (6) summary
      COG0457
      Location:121395
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG0484
      Location:392494
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      sd00006
      Location:3765
      TPR; TPR repeat [structural motif]
      pfam00226
      Location:394459
      DnaJ; DnaJ domain
      pfam00515
      Location:73104
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:36102
      TPR_11; TPR repeat
    Support Center