Format

Send to:

Choose Destination
    • Showing Current items.

    trit1 tRNA isopentenyltransferase 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496761, updated on 20-Jun-2018

    Summary

    Official Symbol
    trit1provided by Xenbase
    Official Full Name
    tRNA isopentenyltransferase 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-494505
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ipt; mod5
    Orthologs

    Genomic context

    See trit1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (86795459..86814804)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668233.1 (14178493..14199081)

    Chromosome 2 - NC_030678.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 2A Neighboring gene MYCL proto-oncogene, bHLH transcription factor Neighboring gene uncharacterized loc548655 Neighboring gene hippocalcin like 4 Neighboring gene 5'-nucleotidase, cytosolic IA

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    tRNA dimethylallyltransferase, mitochondrial
    NP_001011306.1
    XP_017946695.1
    XP_017946696.1
    XP_017946697.1
    XP_017946698.1
    XP_017946699.1
    XP_017946700.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011306.1NP_001011306.1  tRNA dimethylallyltransferase, mitochondrial

      See identical proteins and their annotated locations for NP_001011306.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088030
      UniProtKB/TrEMBL
      Q5M8G8
      Conserved Domains (1) summary
      PRK00091
      Location:11368
      miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030678.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      86795459..86814804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018091210.1XP_017946699.1  tRNA dimethylallyltransferase, mitochondrial isoform X3

    2. XM_018091211.1XP_017946700.1  tRNA dimethylallyltransferase, mitochondrial isoform X4

    3. XM_018091207.1XP_017946696.1  tRNA dimethylallyltransferase, mitochondrial isoform X1

    4. XM_018091206.1XP_017946695.1  tRNA dimethylallyltransferase, mitochondrial isoform X1

    5. XM_018091209.1XP_017946698.1  tRNA dimethylallyltransferase, mitochondrial isoform X2

    6. XM_018091208.1XP_017946697.1  tRNA dimethylallyltransferase, mitochondrial isoform X2

    RNA

    1. XR_001923965.1 RNA Sequence

    Support Center