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    PRDM1 PR/SET domain 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 481947, updated on 26-Sep-2018

    Summary

    Official Symbol
    PRDM1provided by VGNC
    Official Full Name
    PR/SET domain 1provided by VGNC
    Primary source
    VGNC:VGNC:44944
    See related
    Ensembl:ENSCAFG00000003694
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See PRDM1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 12 NC_006594.3 (63454242..63495278)

    Chromosome 12 - NC_006594.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111098185 Neighboring gene 40S ribosomal protein SA-like Neighboring gene autophagy related 5 Neighboring gene crystallin beta-gamma domain containing 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006594.3 Chromosome 12 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    General protein information

    Preferred Names
    PR domain zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006594.3 Reference CanFam3.1 Primary Assembly

      Range
      63454242..63495278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005627673.2XP_005627730.1  PR domain zinc finger protein 1 isoform X2

      Conserved Domains (5) summary
      smart00317
      Location:53170
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:536654
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:543563
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:541563
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:583608
      zf-H2C2_2; Zinc-finger double domain
    2. XM_005627672.2XP_005627729.1  PR domain zinc finger protein 1 isoform X1

      UniProtKB/TrEMBL
      F1PFR8
      Related
      ENSCAFP00000005506.3, ENSCAFT00000005944.3
      Conserved Domains (5) summary
      smart00317
      Location:86203
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:569687
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:576596
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:574596
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:616641
      zf-H2C2_2; Zinc-finger double domain
    3. XM_014118179.2XP_013973654.1  PR domain zinc finger protein 1 isoform X2

      Conserved Domains (5) summary
      smart00317
      Location:53170
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:536654
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:543563
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:541563
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:583608
      zf-H2C2_2; Zinc-finger double domain
    4. XM_005627674.3XP_005627731.1  PR domain zinc finger protein 1 isoform X3

      Conserved Domains (5) summary
      smart00317
      Location:148
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:414532
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:421441
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:419441
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:461486
      zf-H2C2_2; Zinc-finger double domain
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