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    UPF3B UPF3B, regulator of nonsense mediated mRNA decay [ Canis lupus familiaris (dog) ]

    Gene ID: 481031, updated on 26-Sep-2018

    Summary

    Official Symbol
    UPF3Bprovided by VGNC
    Official Full Name
    UPF3B, regulator of nonsense mediated mRNA decayprovided by VGNC
    Primary source
    VGNC:VGNC:48153
    See related
    Ensembl:ENSCAFG00000018426
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See UPF3B in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) X NC_006621.3 (91835845..91851755, complement)

    Chromosome X - NC_006621.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111094952 Neighboring gene ribosomal protein L39 Neighboring gene protein BEX2-like Neighboring gene SET translocation Neighboring gene ring finger protein 113A

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006621.3 Chromosome X Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    regulator of nonsense transcripts 3B
    Names
    UPF3 regulator of nonsense transcripts homolog B

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006621.3 Reference CanFam3.1 Primary Assembly

      Range
      91835845..91851755 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_859377.5XP_864470.1  regulator of nonsense transcripts 3B isoform X3

      Conserved Domains (2) summary
      cd12728
      Location:50137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
      cl26128
      Location:251345
      tRNA-synt_1g; tRNA synthetases class I (M)
    2. XM_005641742.3XP_005641799.1  regulator of nonsense transcripts 3B isoform X2

      Related
      ENSCAFP00000036938.1, ENSCAFT00000049933.2
      Conserved Domains (1) summary
      cd12728
      Location:50137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
    3. XM_846750.5XP_851843.1  regulator of nonsense transcripts 3B isoform X1

      UniProtKB/TrEMBL
      F1PPT4
      Related
      ENSCAFP00000027209.3, ENSCAFT00000029261.3
      Conserved Domains (1) summary
      cd12728
      Location:50137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
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