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    LDB3 LIM domain binding 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 479269, updated on 26-Sep-2018

    Summary

    Official Symbol
    LDB3provided by VGNC
    Official Full Name
    LIM domain binding 3provided by VGNC
    Primary source
    VGNC:VGNC:42620
    See related
    Ensembl:ENSCAFG00000016038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See LDB3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 4 NC_006586.3 (34367155..34421992)

    Chromosome 4 - NC_006586.3Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene opsin 4 Neighboring gene bone morphogenetic protein receptor type 1A Neighboring gene multimerin 2 Neighboring gene synuclein gamma

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006586.3 Chromosome 4 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    LIM domain-binding protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006586.3 Reference CanFam3.1 Primary Assembly

      Range
      34367155..34421992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014112944.2XP_013968419.1  LIM domain-binding protein 3 isoform X1

      Conserved Domains (5) summary
      cd09362
      Location:543594
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:484535
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:602656
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:162258
      DUF4749; Domain of unknown function (DUF4749)
    2. XM_005619108.3XP_005619165.1  LIM domain-binding protein 3 isoform X1

      Related
      ENSCAFP00000023642.3, ENSCAFT00000025464.3
      Conserved Domains (5) summary
      cd09362
      Location:543594
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:484535
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:602656
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:162258
      DUF4749; Domain of unknown function (DUF4749)
    3. XM_005619109.3XP_005619166.1  LIM domain-binding protein 3 isoform X2

      Conserved Domains (5) summary
      cd09362
      Location:532583
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:473524
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:591645
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148247
      DUF4749; Domain of unknown function (DUF4749)
    4. XM_005619111.3XP_005619168.1  LIM domain-binding protein 3 isoform X4

      Related
      ENSCAFP00000039017.1, ENSCAFT00000043135.2
      Conserved Domains (5) summary
      cd09362
      Location:485536
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:426477
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:544598
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:162258
      DUF4749; Domain of unknown function (DUF4749)
    5. XM_005619110.3XP_005619167.1  LIM domain-binding protein 3 isoform X3

      Conserved Domains (5) summary
      cd09362
      Location:527578
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:468519
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:586640
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148242
      DUF4749; Domain of unknown function (DUF4749)
    6. XM_005619112.3XP_005619169.1  LIM domain-binding protein 3 isoform X5

      Conserved Domains (5) summary
      cd09362
      Location:474525
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:415466
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:533587
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148247
      DUF4749; Domain of unknown function (DUF4749)
    7. XM_005619113.3XP_005619170.1  LIM domain-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      E2QW94
      Related
      ENSCAFP00000023672.3, ENSCAFT00000025496.4
      Conserved Domains (5) summary
      cd09362
      Location:469520
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09454
      Location:410461
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd09460
      Location:528582
      LIM3_ZASP_Cypher; The third LIM domain of ZASP/Cypher family
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148242
      DUF4749; Domain of unknown function (DUF4749)
    8. XM_859925.5XP_865018.1  LIM domain-binding protein 3 isoform X7

      Conserved Domains (2) summary
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:162255
      DUF4749; Domain of unknown function (DUF4749)
    9. XM_859776.5XP_864869.1  LIM domain-binding protein 3 isoform X8

      Conserved Domains (2) summary
      cd00992
      Location:581
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148239
      DUF4749; Domain of unknown function (DUF4749)
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