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    COL5A2 collagen type V alpha 2 chain [ Canis lupus familiaris (dog) ]

    Gene ID: 478836, updated on 26-Sep-2018

    Summary

    Official Symbol
    COL5A2provided by VGNC
    Official Full Name
    collagen type V alpha 2 chainprovided by VGNC
    Primary source
    VGNC:VGNC:39478
    See related
    Ensembl:ENSCAFG00000014837
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See COL5A2 in Genome Data Viewer
    Location:
    chromosome: 36
    Exon count:
    55
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 36 NC_006618.3 (30538863..30677450, complement)

    Chromosome 36 - NC_006618.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102156907 Neighboring gene uncharacterized LOC111094296 Neighboring gene collagen type III alpha 1 chain Neighboring gene uncharacterized LOC111094312 Neighboring gene protein Mpv17-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006618.3 Chromosome 36 Reference CanFam3.1 Primary Assembly

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006618.3 Reference CanFam3.1 Primary Assembly

      Range
      30538863..30677450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005640393.3XP_005640450.1  collagen alpha-2(V) chain isoform X1

      UniProtKB/TrEMBL
      F1PG08
      Related
      ENSCAFP00000021860.3, ENSCAFT00000023545.3
      Conserved Domains (4) summary
      pfam01391
      Location:819877
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:4196
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:12671498
      COLFI; Fibrillar collagen C-terminal domain
      pfam09606
      Location:283627
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    2. XM_022414763.1XP_022270471.1  collagen alpha-2(V) chain isoform X2

      Conserved Domains (4) summary
      pfam01391
      Location:798856
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:2075
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:12461477
      COLFI; Fibrillar collagen C-terminal domain
      pfam09606
      Location:262606
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
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