Format

Send to:

Choose Destination
    • Showing Current items.

    SHPRH SNF2 histone linker PHD RING helicase [ Canis lupus familiaris (dog) ]

    Gene ID: 476233, updated on 7-Oct-2019

    Summary

    Official Symbol
    SHPRHprovided by VGNC
    Official Full Name
    SNF2 histone linker PHD RING helicaseprovided by VGNC
    Primary source
    VGNC:VGNC:49029
    See related
    Ensembl:ENSCAFG00000000335
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See SHPRH in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 1 NC_006583.3 (37076318..37170664, complement)

    Chromosome 1 - NC_006583.3Genomic Context describing neighboring genes Neighboring gene F-box protein 30 Neighboring gene proteasome maturation protein pseudogene Neighboring gene uncharacterized LOC111095616 Neighboring gene uncharacterized LOC111095614 Neighboring gene uncharacterized LOC102154181 Neighboring gene glutamate metabotropic receptor 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006583.3 Chromosome 1 Reference CanFam3.1 Primary Assembly

    General gene information

    Homology

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase SHPRH
    XP_005615544.1
    XP_005615545.1
    XP_533438.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006583.3 Reference CanFam3.1 Primary Assembly

      Range
      37076318..37170664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005615487.3XP_005615544.1  E3 ubiquitin-protein ligase SHPRH

      See identical proteins and their annotated locations for XP_005615544.1

      UniProtKB/TrEMBL
      E2R8G0
      Conserved Domains (6) summary
      COG0553
      Location:15131680
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:662708
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:719989
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:442513
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:14311481
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:309393
      SNF2_N; SNF2 family N-terminal domain
    2. XM_533438.5XP_533438.2  E3 ubiquitin-protein ligase SHPRH

      See identical proteins and their annotated locations for XP_533438.2

      UniProtKB/TrEMBL
      E2R8G0
      Conserved Domains (6) summary
      COG0553
      Location:15131680
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:662708
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:719989
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:442513
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:14311481
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:309393
      SNF2_N; SNF2 family N-terminal domain
    3. XM_005615488.3XP_005615545.1  E3 ubiquitin-protein ligase SHPRH

      See identical proteins and their annotated locations for XP_005615545.1

      UniProtKB/TrEMBL
      E2R8G0
      Related
      ENSCAFP00000000468.4, ENSCAFT00000000517.4
      Conserved Domains (6) summary
      COG0553
      Location:15131680
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd15547
      Location:662708
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam00176
      Location:719989
      SNF2_N; SNF2 family N-terminal domain
      pfam00538
      Location:442513
      Linker_histone; linker histone H1 and H5 family
      cd16569
      Location:14311481
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cl26465
      Location:309393
      SNF2_N; SNF2 family N-terminal domain
    Support Center