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    FBXO9 F-box protein 9 [ Canis lupus familiaris (dog) ]

    Gene ID: 474940, updated on 26-Sep-2018

    Summary

    Official Symbol
    FBXO9provided by VGNC
    Official Full Name
    F-box protein 9provided by VGNC
    Primary source
    VGNC:VGNC:40791
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See FBXO9 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 12 NC_006594.3 (20514590..20562507)

    Chromosome 12 - NC_006594.3Genomic Context describing neighboring genes Neighboring gene intestinal cell kinase Neighboring gene uncharacterized LOC111098286 Neighboring gene 39S ribosomal protein L15, mitochondrial pseudogene Neighboring gene glial cells missing homolog 1 Neighboring gene oligosaccharyltransferase complex subunit OSTC pseudogene

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006594.3 Chromosome 12 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001160299.1NP_001153771.1  F-box only protein 9

      Status: VALIDATED

      Source sequence(s)
      AAEX03008398, CK996858, DN352469, DN372713, DN880992
      Conserved Domains (2) summary
      pfam12937
      Location:176222
      F-box-like; F-box-like
      cl00299
      Location:80111
      MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006594.3 Reference CanFam3.1 Primary Assembly

      Range
      20514590..20562507
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022425728.1XP_022281436.1  F-box only protein 9 isoform X4

      Conserved Domains (2) summary
      pfam12937
      Location:124170
      F-box-like
      cl00299
      Location:2959
      MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    2. XM_014118036.2XP_013973511.1  F-box only protein 9 isoform X3

      Conserved Domains (1) summary
      pfam12937
      Location:146192
      F-box-like; F-box-like
    3. XM_022425726.1XP_022281434.1  F-box only protein 9 isoform X1

      Conserved Domains (2) summary
      pfam12937
      Location:143189
      F-box-like
      cl00299
      Location:4778
      MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    4. XM_014118035.2XP_013973510.1  F-box only protein 9 isoform X2

      Conserved Domains (2) summary
      pfam12937
      Location:143189
      F-box-like; F-box-like
      cl00299
      Location:4778
      MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    5. XM_022425727.1XP_022281435.1  F-box only protein 9 isoform X1

      Conserved Domains (2) summary
      pfam12937
      Location:143189
      F-box-like
      cl00299
      Location:4778
      MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
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