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    CALN1 calneuron 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 472402, updated on 6-Oct-2018

    Summary

    Gene symbol
    CALN1
    Gene description
    calneuron 1
    Locus tag
    CK820_G0052208
    See related
    Ensembl:ENSPTRG00000019263
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See CALN1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 7 NC_036886.1 (69758894..70424211, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 7 NC_006474.3 (74330882..74999181)

    Chromosome 7 - NC_036886.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase DTX2 Neighboring gene putative postmeiotic segregation increased 2-like protein 2 Neighboring gene speedy protein E1 Neighboring gene tRNA-yW synthesizing protein 1 homolog B Neighboring gene transmembrane protein 68 pseudogene Neighboring gene ribosome maturation protein SBDS-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036886.1 Reference Clint_PTRv2 Primary Assembly

      Range
      69758894..70424211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016957633.2XP_016813122.1  calcium-binding protein 8 isoform X1

      UniProtKB/TrEMBL
      H2QUP0
      Related
      ENSPTRP00000032917.3
      Conserved Domains (1) summary
      cl25352
      Location:74184
      EFh_PEF; The penta-EF hand (PEF) family
    2. XM_016957634.2XP_016813123.1  calcium-binding protein 8 isoform X2

      Conserved Domains (1) summary
      cl25352
      Location:32142
      EFh_PEF; The penta-EF hand (PEF) family
    3. XM_009453338.3XP_009451613.1  calcium-binding protein 8 isoform X1

      See identical proteins and their annotated locations for XP_009451613.1

      UniProtKB/TrEMBL
      H2QUP0
      Conserved Domains (1) summary
      cl25352
      Location:74184
      EFh_PEF; The penta-EF hand (PEF) family
    4. XM_016957635.1XP_016813124.1  calcium-binding protein 8 isoform X2

      Conserved Domains (1) summary
      cl25352
      Location:32142
      EFh_PEF; The penta-EF hand (PEF) family
    5. XM_009453339.2XP_009451614.1  calcium-binding protein 8 isoform X2

      See identical proteins and their annotated locations for XP_009451614.1

      Conserved Domains (1) summary
      cl25352
      Location:32142
      EFh_PEF; The penta-EF hand (PEF) family
    6. XM_009453340.3XP_009451615.1  calcium-binding protein 8 isoform X2

      See identical proteins and their annotated locations for XP_009451615.1

      Conserved Domains (1) summary
      cl25352
      Location:32142
      EFh_PEF; The penta-EF hand (PEF) family
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