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    MAGED1 MAGE family member D1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 465641, updated on 21-May-2019

    Summary

    Official Symbol
    MAGED1provided by VGNC
    Official Full Name
    MAGE family member D1provided by VGNC
    Primary source
    VGNC:VGNC:1356
    Locus tag
    CK820_G0047691
    See related
    Ensembl:ENSPTRG00000021914
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See MAGED1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) X NC_036902.1 (51389615..51488847)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) X NC_006491.4 (51649560..51748789)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) X NC_006491.3 (52040865..52140100)

    Chromosome X - NC_036902.1Genomic Context describing neighboring genes Neighboring gene centromere protein V pseudogene Neighboring gene G1 to S phase transition 2 Neighboring gene U6 spliceosomal RNA Neighboring gene importin-7 pseudogene Neighboring gene cytochrome b-c1 complex subunit 9 pseudogene

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Neurotrophin signaling pathway, organism-specific biosystem (from KEGG)
      Neurotrophin signaling pathway, organism-specific biosystemNeurotrophins are a family of trophic factors involved in differentiation and survival of neural cells. The neurotrophin family consists of nerve growth factor (NGF), brain derived neurotrophic facto...
    • Neurotrophin signaling pathway, conserved biosystem (from KEGG)
      Neurotrophin signaling pathway, conserved biosystemNeurotrophins are a family of trophic factors involved in differentiation and survival of neural cells. The neurotrophin family consists of nerve growth factor (NGF), brain derived neurotrophic facto...

    General gene information

    Homology

    General protein information

    Preferred Names
    melanoma-associated antigen D1
    Names
    melanoma antigen family D, 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036902.1 Reference Clint_PTRv2 Primary Assembly

      Range
      51389615..51488847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003317464.3XP_003317512.1  melanoma-associated antigen D1 isoform X1

      See identical proteins and their annotated locations for XP_003317512.1

      UniProtKB/TrEMBL
      K7BGA9
      Related
      ENSPTRP00000077780.1, ENSPTRT00000109759.1
      Conserved Domains (3) summary
      pfam01454
      Location:478638
      MAGE; MAGE family
      cl25887
      Location:309548
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl26386
      Location:45334
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    2. XM_024353200.1XP_024208968.1  melanoma-associated antigen D1 isoform X2

      Conserved Domains (3) summary
      pfam01454
      Location:335495
      MAGE; MAGE family
      cl25887
      Location:166405
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl26386
      Location:33191
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    3. XM_521067.5XP_521067.3  melanoma-associated antigen D1 isoform X1

      See identical proteins and their annotated locations for XP_521067.3

      UniProtKB/TrEMBL
      K7BGA9
      Related
      ENSPTRP00000037625.4, ENSPTRT00000040722.4
      Conserved Domains (3) summary
      pfam01454
      Location:478638
      MAGE; MAGE family
      cl25887
      Location:309548
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl26386
      Location:45334
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    4. XM_024353199.1XP_024208967.1  melanoma-associated antigen D1 isoform X2

      Conserved Domains (3) summary
      pfam01454
      Location:335495
      MAGE; MAGE family
      cl25887
      Location:166405
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl26386
      Location:33191
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
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