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    POT1 protection of telomeres 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 463692, updated on 6-Oct-2018

    Summary

    Official Symbol
    POT1provided by VGNC
    Official Full Name
    protection of telomeres 1provided by VGNC
    Primary source
    VGNC:VGNC:4475
    Locus tag
    CK820_G0011712
    See related
    Ensembl:ENSPTRG00000022535 Ensembl:ENSPTRG00000044872
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See POT1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 7 NC_036886.1 (121750759..121869297, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 7 NC_006474.3 (126341448..126459993, complement)

    Chromosome 7 - NC_036886.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 37 Neighboring gene chromosome 7 C7orf77 homolog Neighboring gene elongation factor 1-gamma-like Neighboring gene uncharacterized LOC107975938

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    protection of telomeres protein 1
    Names
    POT1 protection of telomeres 1 homolog
    protection of telomeres 1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036886.1 Reference Clint_PTRv2 Primary Assembly

      Range
      121750759..121869297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003318756.3XP_003318804.1  protection of telomeres protein 1 isoform X2

      See identical proteins and their annotated locations for XP_003318804.1

      Conserved Domains (1) summary
      cd04498
      Location:30147
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    2. XM_009454139.3XP_009452414.1  protection of telomeres protein 1 isoform X2

      See identical proteins and their annotated locations for XP_009452414.1

      Conserved Domains (1) summary
      cd04498
      Location:30147
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    3. XM_016958102.2XP_016813591.1  protection of telomeres protein 1 isoform X2

      Conserved Domains (1) summary
      cd04498
      Location:30147
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    4. XM_016958101.2XP_016813590.1  protection of telomeres protein 1 isoform X2

      Conserved Domains (1) summary
      cd04498
      Location:30147
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    5. XM_009454140.2XP_009452415.1  protection of telomeres protein 1 isoform X2

      See identical proteins and their annotated locations for XP_009452415.1

      Related
      ENSPTRP00000073460.1
      Conserved Domains (1) summary
      cd04498
      Location:30147
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    6. XM_519345.6XP_519345.2  protection of telomeres protein 1 isoform X1

      See identical proteins and their annotated locations for XP_519345.2

      UniProtKB/TrEMBL
      H2R301
      Related
      ENSPTRP00000044703.3
      Conserved Domains (2) summary
      smart00976
      Location:11141
      Telo_bind; Telomeric single stranded DNA binding POT1/CDC13
      cd04498
      Location:161278
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    7. XM_009454137.3XP_009452412.1  protection of telomeres protein 1 isoform X1

      See identical proteins and their annotated locations for XP_009452412.1

      UniProtKB/TrEMBL
      H2R301
      Conserved Domains (2) summary
      smart00976
      Location:11141
      Telo_bind; Telomeric single stranded DNA binding POT1/CDC13
      cd04498
      Location:161278
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...
    8. XM_009454138.3XP_009452413.1  protection of telomeres protein 1 isoform X1

      See identical proteins and their annotated locations for XP_009452413.1

      UniProtKB/TrEMBL
      H2R301
      Conserved Domains (2) summary
      smart00976
      Location:11141
      Telo_bind; Telomeric single stranded DNA binding POT1/CDC13
      cd04498
      Location:161278
      hPOT1_OB2; hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ...

    RNA

    1. XR_681603.2 RNA Sequence

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