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    PSPH phosphoserine phosphatase [ Pan troglodytes (chimpanzee) ]

    Gene ID: 463420, updated on 21-May-2019

    Summary

    Official Symbol
    PSPHprovided by VGNC
    Official Full Name
    phosphoserine phosphataseprovided by VGNC
    Primary source
    VGNC:VGNC:14069
    Locus tag
    CK820_G0044382
    See related
    Ensembl:ENSPTRG00000019205 Ensembl:ENSPTRG00000052383
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan

    Genomic context

    See PSPH in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 7 NC_036886.1 (56265717..56306738, complement)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 7 NC_006474.4 (55452280..55493333, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 7 NC_006474.3 (54668675..54709755, complement)

    Chromosome 7 - NC_036886.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S17 Neighboring gene nipsnap homolog 2 Neighboring gene small nucleolar RNA SNORA22 Neighboring gene small nucleolar RNA SNORA15 Neighboring gene chaperonin containing TCP1 subunit 6A

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Biosynthesis of amino acids, organism-specific biosystem (from KEGG)
      Biosynthesis of amino acids, organism-specific biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
    • Biosynthesis of amino acids, conserved biosystem (from KEGG)
      Biosynthesis of amino acids, conserved biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
    • Carbon metabolism, organism-specific biosystem (from KEGG)
      Carbon metabolism, organism-specific biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
    • Carbon metabolism, conserved biosystem (from KEGG)
      Carbon metabolism, conserved biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
    • Glycine, serine and threonine metabolism, organism-specific biosystem (from KEGG)
      Glycine, serine and threonine metabolism, organism-specific biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
    • Glycine, serine and threonine metabolism, conserved biosystem (from KEGG)
      Glycine, serine and threonine metabolism, conserved biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
    • Metabolic pathways, organism-specific biosystem (from KEGG)
      Metabolic pathways, organism-specific biosystem
      Metabolic pathways
    • Serine biosynthesis, glycerate-3P => serine, organism-specific biosystem (from KEGG)
      Serine biosynthesis, glycerate-3P => serine, organism-specific biosystemPathway module; Nucleotide and amino acid metabolism; Serine and threonine metabolism
    • Serine biosynthesis, glycerate-3P => serine, conserved biosystem (from KEGG)
      Serine biosynthesis, glycerate-3P => serine, conserved biosystemPathway module; Nucleotide and amino acid metabolism; Serine and threonine metabolism

    General gene information

    Markers

    Homology

    • Homologs of the PSPH gene: The PSPH gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, A.thaliana, rice, and frog.
    • Orthologs

    General protein information

    Preferred Names
    phosphoserine phosphatase
    XP_001160853.1
    XP_001161062.1
    XP_016813006.1
    XP_016813007.1
    XP_024213609.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036886.1 Reference Clint_PTRv2 Primary Assembly

      Range
      56265717..56306738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024357841.1XP_024213609.1  phosphoserine phosphatase isoform X1

      Conserved Domains (1) summary
      cd04309
      Location:15216
      HAD_PSP_eu; phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase
    2. XM_001160853.6XP_001160853.1  phosphoserine phosphatase isoform X1

      See identical proteins and their annotated locations for XP_001160853.1

      UniProtKB/TrEMBL
      H2QUL8
      Conserved Domains (1) summary
      cd04309
      Location:15216
      HAD_PSP_eu; phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase
    3. XM_001161062.6XP_001161062.1  phosphoserine phosphatase isoform X1

      See identical proteins and their annotated locations for XP_001161062.1

      UniProtKB/TrEMBL
      H2QUL8
      Related
      ENSPTRP00000032820.3
      Conserved Domains (1) summary
      cd04309
      Location:15216
      HAD_PSP_eu; phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase
    4. XM_016957517.2XP_016813006.1  phosphoserine phosphatase isoform X1

      UniProtKB/TrEMBL
      H2QUL8
      Conserved Domains (1) summary
      cd04309
      Location:15216
      HAD_PSP_eu; phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase
    5. XM_016957518.2XP_016813007.1  phosphoserine phosphatase isoform X2

      Related
      ENSPTRP00000065676.1
      Conserved Domains (2) summary
      pfam00702
      Location:47141
      Hydrolase; haloacid dehalogenase-like hydrolase
      cl21460
      Location:10179
      HAD_like; Haloacid Dehalogenase-like Hydrolases
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