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    KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 462799, updated on 21-May-2019

    Summary

    Official Symbol
    KHDRBS2provided by VGNC
    Official Full Name
    KH RNA binding domain containing, signal transduction associated 2provided by VGNC
    Primary source
    VGNC:VGNC:56171
    Locus tag
    CK820_G0043600
    See related
    Ensembl:ENSPTRG00000018311
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See KHDRBS2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 6 NC_036885.1 (58985929..59658961, complement)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 6 NC_006473.4 (63748515..64436550, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 6 Unlocalized Scaffold NW_003466902.1 (1791040..2451102, complement)

    Chromosome 6 - NC_036885.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107975181 Neighboring gene WD repeat-containing protein 70-like Neighboring gene histone-binding protein RBBP4 pseudogene Neighboring gene dihydrofolate reductase pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP1A pseudogene

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    KH domain-containing, RNA-binding, signal transduction-associated protein 2
    Names
    KH domain containing, RNA binding, signal transduction associated 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036885.1 Reference Clint_PTRv2 Primary Assembly

      Range
      58985929..59658961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016955743.2XP_016811232.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X3

      Conserved Domains (3) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain
      pfam16568
      Location:267297
      Sam68-YY; Tyrosine-rich domain of Sam68
    2. XM_009440123.3XP_009438398.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X3

      See identical proteins and their annotated locations for XP_009438398.1

      Conserved Domains (3) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain
      pfam16568
      Location:267297
      Sam68-YY; Tyrosine-rich domain of Sam68
    3. XM_009440124.2XP_009438399.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X3

      See identical proteins and their annotated locations for XP_009438399.1

      Conserved Domains (3) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain
      pfam16568
      Location:267297
      Sam68-YY; Tyrosine-rich domain of Sam68
    4. XM_009440125.3XP_009438400.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X4

      Conserved Domains (3) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain
      pfam16568
      Location:267298
      Sam68-YY; Tyrosine-rich domain of Sam68
    5. XM_001141327.4XP_001141327.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

      See identical proteins and their annotated locations for XP_001141327.1

      UniProtKB/TrEMBL
      H2QT91
      Related
      ENSPTRP00000031290.3
      Conserved Domains (3) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain
      pfam16568
      Location:267321
      Sam68-YY; Tyrosine-rich domain of Sam68
    6. XM_016955746.2XP_016811235.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X5

      Conserved Domains (2) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain
    7. XM_016955742.1XP_016811231.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X2

      Conserved Domains (2) summary
      cd02395
      Location:61180
      SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
      pfam16274
      Location:657
      Qua1; Qua1 domain

    RNA

    1. XR_001718489.2 RNA Sequence

    2. XR_677074.3 RNA Sequence

    3. XR_002944244.1 RNA Sequence

    4. XR_677073.3 RNA Sequence

    5. XR_002944245.1 RNA Sequence

    6. XR_002944246.1 RNA Sequence

    7. XR_677076.2 RNA Sequence

    8. XR_677075.3 RNA Sequence

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