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    CLIC5 chloride intracellular channel 5 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 462739, updated on 6-Oct-2018

    Summary

    Official Symbol
    CLIC5provided by VGNC
    Official Full Name
    chloride intracellular channel 5provided by VGNC
    Primary source
    VGNC:VGNC:11046
    Locus tag
    CK820_G0007322
    See related
    Ensembl:ENSPTRG00000018230
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See CLIC5 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 6 NC_036885.1 (45407519..45525508, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 6 NC_006473.3 (46547745..46668624, complement)

    Chromosome 6 - NC_036885.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107975153 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107975156 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    chloride intracellular channel protein 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036885.1 Reference Clint_PTRv2 Primary Assembly

      Range
      45407519..45525508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001142749.4XP_001142749.2  chloride intracellular channel protein 5 isoform X1

      See identical proteins and their annotated locations for XP_001142749.2

      UniProtKB/TrEMBL
      H2QT41
      Related
      ENSPTRP00000031153.4, ENSPTRT00000033709.5
      Conserved Domains (1) summary
      TIGR00862
      Location:14249
      O-ClC; intracellular chloride channel protein
    2. XM_009451390.2XP_009449665.1  chloride intracellular channel protein 5 isoform X2

      Related
      ENSPTRP00000081915.1, ENSPTRT00000088464.1
      Conserved Domains (2) summary
      cd03061
      Location:11101
      GST_N_CLIC; GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated ...
      cl02776
      Location:108196
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family
    3. XM_016955635.1XP_016811124.1  chloride intracellular channel protein 5 isoform X3

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