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    YIPF5 Yip1 domain family member 5 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 462162, updated on 23-Mar-2018

    Summary

    Official Symbol
    YIPF5provided by VGNC
    Official Full Name
    Yip1 domain family member 5provided by VGNC
    Primary source
    VGNC:VGNC:13616
    See related
    Ensembl:ENSPTRG00000017365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See YIPF5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 5 NC_036884.1 (122323548..122336030, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 5 NC_006472.3 (144919065..144931550, complement)

    Chromosome 5 - NC_036884.1Genomic Context describing neighboring genes Neighboring gene TNF receptor-associated factor 4 pseudogene Neighboring gene histocompatibility minor HB-1 Neighboring gene potassium channel tetramerization domain containing 16 Neighboring gene uncharacterized LOC107974892 Neighboring gene 60S ribosomal protein L9 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    • Homologs of the YIPF5 gene: The YIPF5 gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
    • Orthologs from Annotation Pipeline: 244 organisms have orthologs with human gene YIPF5

    General protein information

    Preferred Names
    protein YIPF5
    Names
    smooth muscle cell associated protein 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036884.1 Reference Clint_PTRv2 Primary Assembly

      Range
      122323548..122336030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_518011.6XP_518011.2  protein YIPF5

      See identical proteins and their annotated locations for XP_518011.2

      UniProtKB/TrEMBL
      H2QRP8
      Related
      ENSPTRP00000029682.5
      Conserved Domains (1) summary
      cl21557
      Location:89257
      Yip1; Yip1 domain
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