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    COL8A1 collagen type VIII alpha 1 chain [ Pan troglodytes (chimpanzee) ]

    Gene ID: 460550, updated on 5-Oct-2018

    Summary

    Official Symbol
    COL8A1provided by VGNC
    Official Full Name
    collagen type VIII alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:11970
    Locus tag
    CK820_G0016373
    See related
    Ensembl:ENSPTRG00000034541
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See COL8A1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 3 NC_036882.1 (97824178..97984699)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 3 NC_006490.3 (102779971..102939863)

    Chromosome 3 - NC_036882.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107970498 Neighboring gene uncharacterized LOC107970702 Neighboring gene uncharacterized LOC104005661 Neighboring gene filamin A interacting protein 1 like Neighboring gene cms1 ribosomal small subunit homolog Neighboring gene transmembrane protein 258 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    collagen alpha-1(VIII) chain

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036882.1 Reference Clint_PTRv2 Primary Assembly

      Range
      97824178..97984699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024355582.1XP_024211350.1  collagen alpha-1(VIII) chain isoform X1

      Conserved Domains (2) summary
      smart00110
      Location:610745
      C1Q; Complement component C1q domain
      pfam01391
      Location:424482
      Collagen; Collagen triple helix repeat (20 copies)
    2. XM_009445993.3XP_009444268.1  collagen alpha-1(VIII) chain isoform X1

      See identical proteins and their annotated locations for XP_009444268.1

      Conserved Domains (2) summary
      smart00110
      Location:610745
      C1Q; Complement component C1q domain
      pfam01391
      Location:424482
      Collagen; Collagen triple helix repeat (20 copies)
    3. XM_001141952.6XP_001141952.1  collagen alpha-1(VIII) chain isoform X2

      See identical proteins and their annotated locations for XP_001141952.1

      UniProtKB/TrEMBL
      H2RD92
      Related
      ENSPTRP00000058481.2
      Conserved Domains (2) summary
      smart00110
      Location:609744
      C1Q; Complement component C1q domain
      pfam01391
      Location:423481
      Collagen; Collagen triple helix repeat (20 copies)
    4. XM_024355583.1XP_024211351.1  collagen alpha-1(VIII) chain isoform X1

      Conserved Domains (2) summary
      smart00110
      Location:610745
      C1Q; Complement component C1q domain
      pfam01391
      Location:424482
      Collagen; Collagen triple helix repeat (20 copies)
    5. XM_009445994.3XP_009444269.1  collagen alpha-1(VIII) chain isoform X1

      See identical proteins and their annotated locations for XP_009444269.1

      Conserved Domains (2) summary
      smart00110
      Location:610745
      C1Q; Complement component C1q domain
      pfam01391
      Location:424482
      Collagen; Collagen triple helix repeat (20 copies)
    6. XM_001142044.4XP_001142044.1  collagen alpha-1(VIII) chain isoform X2

      See identical proteins and their annotated locations for XP_001142044.1

      UniProtKB/TrEMBL
      H2RD92
      Conserved Domains (2) summary
      smart00110
      Location:609744
      C1Q; Complement component C1q domain
      pfam01391
      Location:423481
      Collagen; Collagen triple helix repeat (20 copies)
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