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    ASB1 ankyrin repeat and SOCS box containing 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 460059, updated on 5-Oct-2018

    Summary

    Official Symbol
    ASB1provided by VGNC
    Official Full Name
    ankyrin repeat and SOCS box containing 1provided by VGNC
    Primary source
    VGNC:VGNC:93
    Locus tag
    CK820_G0045454
    See related
    Ensembl:ENSPTRG00000049853
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See ASB1 in Genome Data Viewer
    Location:
    chromosome: 2B
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 2B NC_036881.1 (125004094..125030973)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 2B NC_006470.3 (243689683..243715701)

    Chromosome 2B - NC_036881.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107973989 Neighboring gene uncharacterized LOC107973991 Neighboring gene uncharacterized LOC107973992

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    ankyrin repeat and SOCS box protein 1
    Names
    ankyrin repeat and SOCS box-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036881.1 Reference Clint_PTRv2 Primary Assembly

      Range
      125004094..125030973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_516189.7XP_516189.3  ankyrin repeat and SOCS box protein 1 isoform X1

      See identical proteins and their annotated locations for XP_516189.3

      UniProtKB/TrEMBL
      H2QJQ2
      Related
      ENSPTRP00000086427.1
      Conserved Domains (4) summary
      cd00204
      Location:79212
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd03720
      Location:294335
      SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
      sd00045
      Location:79108
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:22108
      Ank_2; Ankyrin repeats (3 copies)
    2. XM_024355161.1XP_024210929.1  ankyrin repeat and SOCS box protein 1 isoform X2

      Conserved Domains (3) summary
      cd00204
      Location:39165
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd03720
      Location:193234
      SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
      sd00045
      Location:3871
      ANK; ANK repeat [structural motif]
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