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    ATG4C autophagy related 4C cysteine peptidase [ Pan troglodytes (chimpanzee) ]

    Gene ID: 456903, updated on 25-May-2019

    Summary

    Official Symbol
    ATG4Cprovided by VGNC
    Official Full Name
    autophagy related 4C cysteine peptidaseprovided by VGNC
    Primary source
    VGNC:VGNC:8148
    Locus tag
    CK820_G0010438
    See related
    Ensembl:ENSPTRG00000000813
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See ATG4C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 1 NC_036879.1 (61595775..61676964)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 1 NC_006468.4 (62682771..62771132)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 1 NC_006468.3 (63367847..63452589)

    Chromosome 1 - NC_036879.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 7 Neighboring gene 60S ribosomal protein L13a pseudogene Neighboring gene uncharacterized LOC112204549 Neighboring gene uncharacterized LOC104008390 Neighboring gene uncharacterized LOC107966972

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    cysteine protease ATG4C
    Names
    APG4 autophagy 4 homolog C
    ATG4 autophagy related 4 homolog C
    XP_001159883.1
    XP_001159976.1
    XP_009457953.1
    XP_016775219.1
    XP_016775225.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036879.1 Reference Clint_PTRv2 Primary Assembly

      Range
      61595775..61676964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001159976.4XP_001159976.1  cysteine protease ATG4C isoform X1

      See identical proteins and their annotated locations for XP_001159976.1

      UniProtKB/TrEMBL
      H2PZ58
      Related
      ENSPTRP00000001405.4, ENSPTRT00000001543.5
      Conserved Domains (1) summary
      pfam03416
      Location:77394
      Peptidase_C54; Peptidase family C54
    2. XM_001159883.4XP_001159883.1  cysteine protease ATG4C isoform X1

      See identical proteins and their annotated locations for XP_001159883.1

      UniProtKB/TrEMBL
      H2PZ58
      Conserved Domains (1) summary
      pfam03416
      Location:77394
      Peptidase_C54; Peptidase family C54
    3. XM_016919736.2XP_016775225.1  cysteine protease ATG4C isoform X3

      Conserved Domains (1) summary
      pfam03416
      Location:77363
      Peptidase_C54; Peptidase family C54
    4. XM_016919730.2XP_016775219.1  cysteine protease ATG4C isoform X2

    5. XM_009459678.3XP_009457953.1  cysteine protease ATG4C isoform X1

      See identical proteins and their annotated locations for XP_009457953.1

      UniProtKB/TrEMBL
      H2PZ58
      Conserved Domains (1) summary
      pfam03416
      Location:77394
      Peptidase_C54; Peptidase family C54
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