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    RFWD3 ring finger and WD repeat domain 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 454242, updated on 5-Oct-2018

    Summary

    Official Symbol
    RFWD3provided by VGNC
    Official Full Name
    ring finger and WD repeat domain 3provided by VGNC
    Primary source
    VGNC:VGNC:5908
    Locus tag
    CK820_G0042744
    See related
    Ensembl:ENSPTRG00000008348
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See RFWD3 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 16 NC_036895.1 (60238715..60284351, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 16 NC_006483.3 (74009547..74057442, complement)

    Chromosome 16 - NC_036895.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 18 member B Neighboring gene golgi glycoprotein 1 Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene lamina-associated polypeptide 2, isoforms beta/gamma pseudogene Neighboring gene mixed lineage kinase domain like pseudokinase Neighboring gene fatty acid 2-hydroxylase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase RFWD3
    XP_001137409.2
    XP_009429520.2
    XP_016785652.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036895.1 Reference Clint_PTRv2 Primary Assembly

      Range
      60238715..60284351 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001137409.6XP_001137409.2  E3 ubiquitin-protein ligase RFWD3

      UniProtKB/TrEMBL
      K7APE2
      Related
      ENSPTRP00000014254.5
      Conserved Domains (3) summary
      sd00039
      Location:500537
      7WD40; WD40 repeat [structural motif]
      cd16450
      Location:283331
      mRING-C3HGC3_RFWD3; Modified RING finger, C3HGC3-type, found in RING finger and WD repeat domain-containing protein 3 (RFWD3) and similar proteins
      cl25539
      Location:496762
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_016930163.2XP_016785652.1  E3 ubiquitin-protein ligase RFWD3

      UniProtKB/TrEMBL
      K7APE2
      Conserved Domains (3) summary
      sd00039
      Location:500537
      7WD40; WD40 repeat [structural motif]
      cd16450
      Location:283331
      mRING-C3HGC3_RFWD3; Modified RING finger, C3HGC3-type, found in RING finger and WD repeat domain-containing protein 3 (RFWD3) and similar proteins
      cl25539
      Location:496762
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_009431245.3XP_009429520.2  E3 ubiquitin-protein ligase RFWD3

      UniProtKB/TrEMBL
      K7APE2
      Conserved Domains (3) summary
      sd00039
      Location:500537
      7WD40; WD40 repeat [structural motif]
      cd16450
      Location:283331
      mRING-C3HGC3_RFWD3; Modified RING finger, C3HGC3-type, found in RING finger and WD repeat domain-containing protein 3 (RFWD3) and similar proteins
      cl25539
      Location:496762
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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