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    SNAP23 synaptosome associated protein 23 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 453365, updated on 5-Oct-2018

    Summary

    Official Symbol
    SNAP23provided by VGNC
    Official Full Name
    synaptosome associated protein 23provided by VGNC
    Primary source
    VGNC:VGNC:3528
    Locus tag
    CK820_G0033568
    See related
    Ensembl:ENSPTRG00000006975
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See SNAP23 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 15 NC_036894.1 (20907023..20949137)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 15 NC_006482.3 (39486900..39528045)

    Chromosome 15 - NC_036894.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene calpain-3 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 106 Neighboring gene leucine rich repeat containing 57 Neighboring gene myosin regulatory light chain 12B pseudogene Neighboring gene HAUS augmin like complex subunit 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    synaptosomal-associated protein 23
    Names
    synaptosomal-associated protein, 23kDa

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036894.1 Reference Clint_PTRv2 Primary Assembly

      Range
      20907023..20949137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024349142.1XP_024204910.1  synaptosomal-associated protein 23 isoform X1

      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
    2. XM_016928036.2XP_016783525.1  synaptosomal-associated protein 23 isoform X1

      UniProtKB/TrEMBL
      H2Q995
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
    3. XM_001154144.4XP_001154144.1  synaptosomal-associated protein 23 isoform X3

      See identical proteins and their annotated locations for XP_001154144.1

      UniProtKB/TrEMBL
      H2Q994
      Related
      ENSPTRP00000011911.2
      Conserved Domains (2) summary
      cd15884
      Location:96154
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cl22856
      Location:975
      SNARE; SNARE motif
    4. XM_016928037.2XP_016783526.1  synaptosomal-associated protein 23 isoform X2

    5. XM_001154600.4XP_001154600.1  synaptosomal-associated protein 23 isoform X1

      See identical proteins and their annotated locations for XP_001154600.1

      UniProtKB/TrEMBL
      H2Q995
      Related
      ENSPTRP00000011912.2
      Conserved Domains (3) summary
      cd15884
      Location:149207
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      cd15895
      Location:975
      SNARE_SNAP23N; N-terminal SNARE motif of SNAP23
      pfam00835
      Location:86147
      SNAP-25; SNAP-25 family
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