Format

Send to:

Choose Destination
    • Showing Current items.

    ARNTL aryl hydrocarbon receptor nuclear translocator like [ Pan troglodytes (chimpanzee) ]

    Gene ID: 451034, updated on 5-Oct-2018

    Summary

    Official Symbol
    ARNTLprovided by VGNC
    Official Full Name
    aryl hydrocarbon receptor nuclear translocator likeprovided by VGNC
    Primary source
    VGNC:VGNC:1622
    Locus tag
    CK820_G0005730
    See related
    Ensembl:ENSPTRG00000003376
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See ARNTL in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 11 NC_036890.1 (13154517..13264008)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 11 NC_006478.3 (13135675..13245743)

    Chromosome 11 - NC_036890.1Genomic Context describing neighboring genes Neighboring gene TEA domain transcription factor 1 Neighboring gene uncharacterized LOC100608827 Neighboring gene Ras association domain family member 10 Neighboring gene BTB domain containing 10 Neighboring gene parathyroid hormone

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Circadian rhythm, organism-specific biosystem (from KEGG)
      Circadian rhythm, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Circadian rhythm, conserved biosystem (from KEGG)
      Circadian rhythm, conserved biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Dopaminergic synapse, organism-specific biosystem (from KEGG)
      Dopaminergic synapse, organism-specific biosystemDopamine (DA) is an important and prototypical slow neurotransmitter in the mammalian brain, where it controls a variety of functions including locomotor activity, motivation and reward, learning an...
    • Dopaminergic synapse, conserved biosystem (from KEGG)
      Dopaminergic synapse, conserved biosystemDopamine (DA) is an important and prototypical slow neurotransmitter in the mammalian brain, where it controls a variety of functions including locomotor activity, motivation and reward, learning an...
    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    aryl hydrocarbon receptor nuclear translocator-like protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036890.1 Reference Clint_PTRv2 Primary Assembly

      Range
      13154517..13264008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024346986.1XP_024202754.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X19

      Conserved Domains (3) summary
      smart00091
      Location:132191
      PAS; PAS domain
      pfam00010
      Location:57109
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:322424
      PAS_3; PAS fold
    2. XM_024346988.1XP_024202756.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X20

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:296398
      PAS_3; PAS fold
    3. XM_024346991.1XP_024202759.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X22

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:296398
      PAS_3; PAS fold
    4. XM_024346993.1XP_024202761.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X23

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:295397
      PAS_3; PAS fold
    5. XM_016920423.2XP_016775912.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X13

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    6. XM_016920427.1XP_016775916.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X15

      UniProtKB/TrEMBL
      K7AL74
      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    7. XM_016920429.1XP_016775918.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X16

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:338440
      PAS_3; PAS fold
    8. XM_024346985.1XP_024202753.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X19

      Conserved Domains (3) summary
      smart00091
      Location:132191
      PAS; PAS domain
      pfam00010
      Location:57109
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:322424
      PAS_3; PAS fold
    9. XM_009459973.3XP_009458248.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X22

      See identical proteins and their annotated locations for XP_009458248.1

      UniProtKB/TrEMBL
      K7B3B1
      Related
      ENSPTRP00000043973.5
      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:296398
      PAS_3; PAS fold
    10. XM_024346990.1XP_024202758.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X21

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:295397
      PAS_3; PAS fold
    11. XM_009459974.2XP_009458249.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X23

      See identical proteins and their annotated locations for XP_009458249.1

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:295397
      PAS_3; PAS fold
    12. XM_016920422.2XP_016775911.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X13

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    13. XM_016920426.1XP_016775915.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X15

      UniProtKB/TrEMBL
      K7AL74
      Related
      ENSPTRP00000093293.1, ENSPTRT00000111040.1
      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    14. XM_024346980.1XP_024202748.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X14

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:338440
      PAS_3; PAS fold
    15. XM_016920428.1XP_016775917.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X16

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:338440
      PAS_3; PAS fold
    16. XM_024346983.1XP_024202751.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X17

      Conserved Domains (3) summary
      smart00091
      Location:136195
      PAS; PAS domain
      pfam00010
      Location:61113
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:326428
      PAS_3; PAS fold
    17. XM_024346984.1XP_024202752.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X18

      Conserved Domains (3) summary
      smart00091
      Location:136195
      PAS; PAS domain
      pfam00010
      Location:61113
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:325427
      PAS_3; PAS fold
    18. XM_024346992.1XP_024202760.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X22

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:296398
      PAS_3; PAS fold
    19. XM_024346981.1XP_024202749.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X15

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    20. XM_024346982.1XP_024202750.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X16

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:338440
      PAS_3; PAS fold
    21. XM_016920425.2XP_016775914.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X13

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    22. XM_024346987.1XP_024202755.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X20

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:296398
      PAS_3; PAS fold
    23. XM_024346989.1XP_024202757.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X20

      Conserved Domains (3) summary
      smart00091
      Location:106165
      PAS; PAS domain
      pfam00010
      Location:3183
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:296398
      PAS_3; PAS fold
    24. XM_016920424.1XP_016775913.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X13

      Conserved Domains (3) summary
      smart00091
      Location:149208
      PAS; PAS domain
      pfam00010
      Location:74126
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:339441
      PAS_3; PAS fold
    25. XM_016920414.1XP_016775903.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    26. XM_016920416.1XP_016775905.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    27. XM_016920415.1XP_016775904.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

    28. XM_016920417.1XP_016775906.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X4

    29. XM_016920420.1XP_016775909.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X8

    30. XM_016920418.1XP_016775907.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

    31. XM_016920419.1XP_016775908.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X6

    32. XM_024346976.1XP_024202744.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X7

      Conserved Domains (3) summary
      smart00091
      Location:340399
      PAS; PAS domain
      pfam00010
      Location:265317
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:529631
      PAS_3; PAS fold
    33. XM_016920421.2XP_016775910.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X12

    34. XM_024346977.1XP_024202745.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X9

      Conserved Domains (3) summary
      smart00091
      Location:132191
      PAS; PAS domain
      pfam00010
      Location:57109
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:322424
      PAS_3; PAS fold
    35. XM_024346978.1XP_024202746.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X10

      Conserved Domains (3) summary
      smart00091
      Location:132191
      PAS; PAS domain
      pfam00010
      Location:57109
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:321423
      PAS_3; PAS fold
    36. XM_024346979.1XP_024202747.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X11

      Conserved Domains (3) summary
      smart00091
      Location:132191
      PAS; PAS domain
      pfam00010
      Location:57109
      HLH; Helix-loop-helix DNA-binding domain
      cl25986
      Location:321423
      PAS_3; PAS fold

    RNA

    1. XR_001707165.1 RNA Sequence

    Support Center