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    SVIL supervillin [ Pan troglodytes (chimpanzee) ]

    Gene ID: 450874, updated on 5-Oct-2018

    Summary

    Official Symbol
    SVILprovided by VGNC
    Official Full Name
    supervillinprovided by VGNC
    Primary source
    VGNC:VGNC:5797
    Locus tag
    CK820_G0018843
    See related
    Ensembl:ENSPTRG00000002392
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan

    Genomic context

    See SVIL in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 10 NC_036889.1 (29594287..29870673, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 10 NC_006477.3 (29898297..30180545, complement)

    Chromosome 10 - NC_036889.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104008133 Neighboring gene uncharacterized LOC104008132 Neighboring gene lysozyme-like protein 1 Neighboring gene uncharacterized LOC107966908 Neighboring gene uncharacterized LOC735719 Neighboring gene small nucleolar RNA SNORD115 Neighboring gene microRNA 604 Neighboring gene microRNA 938 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC107976952 Neighboring gene junctional cadherin 5 associated

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036889.1 Reference Clint_PTRv2 Primary Assembly

      Range
      29594287..29870673 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016962858.2XP_016818347.1  supervillin isoform X8

    2. XM_016962859.2XP_016818348.1  supervillin isoform X8

    3. XM_016962861.2XP_016818350.1  supervillin isoform X8

    4. XM_016962860.2XP_016818349.1  supervillin isoform X8

    5. XM_016962850.2XP_016818339.1  supervillin isoform X1

    6. XM_016962852.2XP_016818341.1  supervillin isoform X3

    7. XM_016962855.2XP_016818344.1  supervillin isoform X6

    8. XM_016962853.2XP_016818342.1  supervillin isoform X4

    9. XM_016962854.2XP_016818343.1  supervillin isoform X5

    10. XM_016962851.2XP_016818340.1  supervillin isoform X2

    11. XM_016962857.2XP_016818346.1  supervillin isoform X7

      Related
      ENSPTRP00000074764.1
    12. XM_016962865.2XP_016818354.1  supervillin isoform X13

    13. XM_016962863.2XP_016818352.1  supervillin isoform X11

    14. XM_016962867.2XP_016818356.1  supervillin isoform X14

    15. XM_016962864.2XP_016818353.1  supervillin isoform X12

    16. XM_016962869.2XP_016818358.1  supervillin isoform X16

    17. XM_016962868.2XP_016818357.1  supervillin isoform X15

    18. XM_016962871.2XP_016818360.1  supervillin isoform X18

    19. XM_009458193.3XP_009456468.1  supervillin isoform X19

      See identical proteins and their annotated locations for XP_009456468.1

      UniProtKB/TrEMBL
      K7BXX8
      Related
      ENSPTRP00000081447.1
      Conserved Domains (6) summary
      smart00153
      Location:17531788
      VHP; Villin headpiece domain
      cd11280
      Location:11371237
      gelsolin_like; Tandemly repeated domains found in gelsolin, severin, villin, and related proteins
      cd11288
      Location:14531558
      gelsolin_S5_like; Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins
      cd11289
      Location:10161112
      gelsolin_S2_like; Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins
      cd11293
      Location:13201433
      gelsolin_S4_like; Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins
      cl15697
      Location:15751697
      ADF_gelsolin; Actin depolymerization factor/cofilin- and gelsolin-like domains
    20. XM_001136112.5XP_001136112.1  supervillin isoform X9

      UniProtKB/TrEMBL
      H2Q1S4
      Related
      ENSPTRP00000004060.4
      Conserved Domains (6) summary
      smart00153
      Location:21792214
      VHP; Villin headpiece domain
      cd11280
      Location:15631663
      gelsolin_like; Tandemly repeated domains found in gelsolin, severin, villin, and related proteins
      cd11288
      Location:18791984
      gelsolin_S5_like; Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins
      cd11289
      Location:14421538
      gelsolin_S2_like; Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins
      cd11293
      Location:17461859
      gelsolin_S4_like; Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins
      cl15697
      Location:20012123
      ADF_gelsolin; Actin depolymerization factor/cofilin- and gelsolin-like domains
    21. XM_016962870.2XP_016818359.1  supervillin isoform X17

    22. XM_016962862.2XP_016818351.1  supervillin isoform X10

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