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    vezf1 vascular endothelial zinc finger 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448632, updated on 23-Dec-2019

    Summary

    Official Symbol
    vezf1provided by Xenbase
    Official Full Name
    vascular endothelial zinc finger 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-481523
    See related
    Ensembl:ENSXETG00000012518
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    db1; znf161; vezf1-a; vezf1-b
    Orthologs

    Genomic context

    See vezf1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (76136370..76162601)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (50321080..50348823)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 2A Neighboring gene serine/arginine-rich splicing factor 1 Neighboring gene CUE domain containing 1 Neighboring gene guanylate cyclase activator 1C

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General gene information

    Homology

    Clone Names

    • MGC82370, MGC89490

    General protein information

    Preferred Names
    vascular endothelial zinc finger 1
    Names
    zinc finger protein 161
    zinc finger protein 161. Transcription factor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006864.1NP_001006865.1  vascular endothelial zinc finger 1

      See identical proteins and their annotated locations for NP_001006865.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076974
      UniProtKB/TrEMBL
      Q6DEW9
      Related
      ENSXETP00000038195.1, ENSXETT00000027851.1
      Conserved Domains (2) summary
      COG5189
      Location:206263
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:184204
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      76136370..76162601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956767.3XP_012812221.1  vascular endothelial zinc finger 1 isoform X3

      Conserved Domains (2) summary
      sd00017
      Location:184204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:196221
      zf-H2C2_2; Zinc-finger double domain
    2. XM_012956766.3XP_012812220.1  vascular endothelial zinc finger 1 isoform X2

      Related
      ENSXETP00000038192.1
      Conserved Domains (2) summary
      sd00017
      Location:184204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:196221
      zf-H2C2_2; Zinc-finger double domain
    3. XM_012956765.3XP_012812219.1  vascular endothelial zinc finger 1 isoform X1

      Conserved Domains (3) summary
      PHA03255
      Location:354502
      PHA03255; BDLF3; Provisional
      sd00017
      Location:184204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:196221
      zf-H2C2_2; Zinc-finger double domain
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