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    nfil3 nuclear factor, interleukin 3 regulated [ Danio rerio (zebrafish) ]

    Gene ID: 445509, updated on 3-Oct-2019

    Summary

    Official Symbol
    nfil3provided by ZNC
    Official Full Name
    nuclear factor, interleukin 3 regulatedprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040822-28
    See related
    Ensembl:ENSDARG00000042977
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    E4BP4-1; zgc:100867
    Orthologs

    Genomic context

    See nfil3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (5414243..5419256)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (5413939..5418952)
    103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (5417645..5422658)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911709 Neighboring gene uncharacterized LOC103911708 Neighboring gene receptor tyrosine kinase-like orphan receptor 2 Neighboring gene AU RNA binding protein/enoyl-CoA hydratase Neighboring gene spleen tyrosine kinase Neighboring gene DIRAS family GTPase 2

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    circadian rhythm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
     
    heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    immune response IEA
    Inferred from Electronic Annotation
    more info
     
    myeloid cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of transcription, DNA-templated ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    rhythmic process IEA
    Inferred from Electronic Annotation
    more info
     
    transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nuclear factor interleukin-3-regulated protein
    Names
    E4 binding protein 4-1
    E4BP4
    ze4bp4-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004120.2NP_001004120.1  nuclear factor interleukin-3-regulated protein

      See identical proteins and their annotated locations for NP_001004120.1

      Status: PROVISIONAL

      Source sequence(s)
      BC080210
      UniProtKB/Swiss-Prot
      Q68EL6
      UniProtKB/TrEMBL
      E2E3F5
      Related
      ENSDARP00000119920.1, ENSDART00000138821.2
      Conserved Domains (2) summary
      cd14694
      Location:62121
      bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
      pfam06529
      Location:120452
      Vert_IL3-reg_TF; Vertebrate interleukin-3 regulated transcription factor

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      5414243..5419256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394764.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      227269..232282
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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