Format

Send to:

Choose Destination
    • Showing Current items.

    babam1 BRISC and BRCA1 A complex member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 445296, updated on 14-Feb-2019

    Summary

    Official Symbol
    babam1provided by ZNC
    Official Full Name
    BRISC and BRCA1 A complex member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040808-6
    See related
    Ensembl:ENSDARG00000077526
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    nba1; merit40; zgc:100909
    Orthologs

    Genomic context

    See babam1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (6051287..6068432, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (6054032..6071173, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (6086190..6102974, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene GTP binding protein 3, mitochondrial Neighboring gene plasmalemma vesicle associated protein b Neighboring gene si:ch73-112j3.1 Neighboring gene Usher syndrome 1C binding protein 1

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to DNA damage stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    double-strand break repair ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of DNA repair ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein K63-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    response to ionizing radiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    signal transduction involved in G2 DNA damage checkpoint ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    BRCA1-A complex IEA
    Inferred from Electronic Annotation
    more info
     
    BRCA1-A complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    BRISC complex IEA
    Inferred from Electronic Annotation
    more info
     
    BRISC complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BRISC and BRCA1-A complex member 1
    Names
    BRCA1-A complex subunit MERIT40
    mediator of RAP80 interactions and targeting subunit of 40 kDa
    new component of the BRCA1-A complex

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003752.2NP_001003752.2  BRISC and BRCA1-A complex member 1

      Status: VALIDATED

      Source sequence(s)
      BX255969, CN323673, CT573239, EH490619, EH516962
      UniProtKB/Swiss-Prot
      Q6AXK4
      Related
      ENSDARP00000108272.1, ENSDART00000122262.3
      Conserved Domains (1) summary
      TIGR03436
      Location:157208
      acidobact_VWFA; VWFA-related Acidobacterial domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      6051287..6068432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017358217.2XP_017213706.1  BRISC and BRCA1-A complex member 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6AXK4
      Related
      ENSDARP00000015195.7, ENSDART00000008980.8
      Conserved Domains (1) summary
      TIGR03436
      Location:157208
      acidobact_VWFA; VWFA-related Acidobacterial domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394801.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      245986..246624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center