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    tipin timeless interacting protein [ Danio rerio (zebrafish) ]

    Gene ID: 445058, updated on 1-Aug-2018

    Summary

    Official Symbol
    tipinprovided by ZNC
    Official Full Name
    timeless interacting proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-189
    See related
    Ensembl:ENSDARG00000036136 Vega:OTTDARG00000043867
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:91928
    Orthologs

    Genomic context

    See tipin in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (34236240..34240903)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (33965104..33969753)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene crystallin beta gamma X Neighboring gene lactase-like a Neighboring gene DIS3 like exosome 3'-5' exoribonuclease Neighboring gene si:ch211-98n17.5

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA replication checkpoint IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    DNA replication checkpoint ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell cycle phase transition ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to DNA damage stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    intra-S DNA damage checkpoint ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of cell proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    replication fork arrest IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    replication fork protection IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    replication fork protection IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear chromatin ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    replication fork protection complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    TIMELESS-interacting protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003452.2NP_001003452.2  TIMELESS-interacting protein

      Status: VALIDATED

      Source sequence(s)
      BC078398, EH562814
      UniProtKB/Swiss-Prot
      Q6DBR4
      UniProtKB/TrEMBL
      G1K2L6
      Related
      ENSDARP00000052473.3, OTTDARP00000049842, ENSDART00000052474.6, OTTDART00000063731
      Conserved Domains (1) summary
      pfam07962
      Location:75153
      Swi3; Replication Fork Protection Component Swi3

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      34236240..34240903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168874.4XP_005168931.1  TIMELESS-interacting protein isoform X1

      Conserved Domains (1) summary
      pfam07962
      Location:75153
      Swi3; Replication Fork Protection Component Swi3

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394698.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      202005..206634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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