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    patl2.L protein associated with topoisomerase II homolog 2 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 443730, updated on 5-Aug-2018

    Summary

    Symbol
    patl2.L
    Full Name
    protein associated with topoisomerase II homolog 2 L homeolog
    Primary source
    Xenbase:XB-GENE-5892260
    Locus tag
    XELAEV_18011481mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    p100; Pat1a; patl2; XPat1a

    Genomic context

    See patl2.L in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (13684430..13700916)

    Chromosome 2L - NC_030726.1Genomic Context describing neighboring genes Neighboring gene protein SON-like Neighboring gene serine/arginine repetitive matrix protein 2-like Neighboring gene phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase L homeolog Neighboring gene trifunctional purine biosynthetic protein adenosine-3-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030726.1 Chromosome 2L Reference Xenopus_laevis_v2 Primary Assembly

    Pathways from BioSystems

    • Decapping complex, organism-specific biosystem (from KEGG)
      Decapping complex, organism-specific biosystemStructural complex; Genetic information processing; RNA processing
    • Decapping complex, conserved biosystem (from KEGG)
      Decapping complex, conserved biosystemStructural complex; Genetic information processing; RNA processing
    • RNA degradation, organism-specific biosystem (from KEGG)
      RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
    • RNA degradation, conserved biosystem (from KEGG)
      RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    protein PAT1 homolog 2
    Names
    PAT1-like protein 2
    Protein P100
    Protein PAT1 homolog a
    egg-specific protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091842.1NP_001085311.1  protein PAT1 homolog 2

      See identical proteins and their annotated locations for NP_001085311.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097860
      UniProtKB/Swiss-Prot
      Q4V7K4
      Conserved Domains (2) summary
      pfam04503
      Location:210303
      SSDP; Single-stranded DNA binding protein, SSDP
      pfam09770
      Location:443580
      PAT1; Topoisomerase II-associated protein PAT1

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NC_030726.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      13684430..13700916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018245014.1XP_018100503.1  protein PAT1 homolog 2 isoform X2

    2. XM_018245012.1XP_018100501.1  protein PAT1 homolog 2 isoform X1

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