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    WHRN whirlin [ Gallus gallus (chicken) ]

    Gene ID: 429472, updated on 20-Jun-2018

    Summary

    Symbol
    WHRNprovided by CGNC
    Full Name
    whirlinprovided by CGNC
    Primary source
    CGNC:4742
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    DFNB31
    Orthologs

    Genomic context

    See WHRN in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 17 NC_006104.5 (2832094..2859053, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 17 NC_006104.4 (2963425..2990386, complement)

    Chromosome 17 - NC_006104.5Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 1 Neighboring gene microRNA 7442 Neighboring gene AT-hook transcription factor Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene transmembrane protein 268

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    General protein information

    Preferred Names
    whirlin
    Names
    deafness, autosomal recessive 31

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006104.5 Reference GRCg6a Primary Assembly

      Range
      2832094..2859053 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015279689.2XP_015135175.1  whirlin isoform X2

      Conserved Domains (3) summary
      cd00992
      Location:125205
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07357
      Location:406485
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      cl11968
      Location:31108
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
    2. XM_427028.6XP_427028.5  whirlin isoform X1

      Conserved Domains (3) summary
      cd00992
      Location:125205
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07357
      Location:406485
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      cl11968
      Location:31108
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
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