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    CWC22 CWC22 spliceosome associated protein homolog [ Gallus gallus (chicken) ]

    Gene ID: 424123, updated on 7-Jul-2018

    Summary

    Symbol
    CWC22provided by CGNC
    Full Name
    CWC22 spliceosome associated protein homologprovided by CGNC
    Primary source
    CGNC:52133
    See related
    Ensembl:ENSGALG00000009001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See CWC22 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 7 NC_006094.5 (14564045..14808141)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 7 NC_006094.4 (14783127..14861223)

    Chromosome 7 - NC_006094.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053809 Neighboring gene ceramide kinase like Neighboring gene integrin subunit alpha 4 Neighboring gene ubiquitin conjugating enzyme E2 E3 Neighboring gene zinc finger protein 385B Neighboring gene uncharacterized LOC107053800

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    U2-type catalytic step 1 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear speck IEA
    Inferred from Electronic Annotation
    more info
     
    spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    pre-mRNA-splicing factor CWC22 homolog
    Names
    CWC22 homolog, spliceosome-associated protein
    nucampholin homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031250.2NP_001026421.2  pre-mRNA-splicing factor CWC22 homolog

      Status: VALIDATED

      Source sequence(s)
      AADN05000350
      UniProtKB/TrEMBL
      F1NI57
      Related
      ENSGALP00000014627.4, ENSGALT00000014643.4
      Conserved Domains (3) summary
      smart00543
      Location:170351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      cl02653
      Location:458564
      MA3; MA3 domain
      cl28310
      Location:710886
      Rho; Transcription termination factor Rho [Transcription]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006094.5 Reference GRCg6a Primary Assembly

      Range
      14564045..14808141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025152190.1XP_025007958.1  pre-mRNA-splicing factor CWC22 homolog isoform X1

      Conserved Domains (3) summary
      smart00543
      Location:170351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      cl02653
      Location:458564
      MA3; MA3 domain
      cl28310
      Location:710886
      Rho; Transcription termination factor Rho [Transcription]
    2. XM_025152189.1XP_025007957.1  pre-mRNA-splicing factor CWC22 homolog isoform X1

      Conserved Domains (3) summary
      smart00543
      Location:170351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      cl02653
      Location:458564
      MA3; MA3 domain
      cl28310
      Location:710886
      Rho; Transcription termination factor Rho [Transcription]
    3. XM_015289438.2XP_015144924.1  pre-mRNA-splicing factor CWC22 homolog isoform X1

      UniProtKB/TrEMBL
      F1NI57
      Conserved Domains (3) summary
      smart00543
      Location:170351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      cl02653
      Location:458564
      MA3; MA3 domain
      cl28310
      Location:710886
      Rho; Transcription termination factor Rho [Transcription]
    4. XM_015289439.2XP_015144925.1  pre-mRNA-splicing factor CWC22 homolog isoform X1

      UniProtKB/TrEMBL
      F1NI57
      Related
      ENSGALP00000043058.2
      Conserved Domains (3) summary
      smart00543
      Location:170351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      cl02653
      Location:458564
      MA3; MA3 domain
      cl28310
      Location:710886
      Rho; Transcription termination factor Rho [Transcription]
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