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    Cbp20 cap binding protein 20 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42166, updated on 9-May-2019

    Summary

    Official Symbol
    Cbp20provided by FlyBase
    Official Full Name
    cap binding protein 20provided by FlyBase
    Primary source
    FLYBASE:FBgn0022943
    Locus tag
    Dmel_CG12357
    Gene type
    protein coding
    RNA name
    cap binding protein 20
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cbp20; CBP20; CG12357; Dmel\CG12357

    Genomic context

    See Cbp20 in Genome Data Viewer
    Location:
    90F4-90F4; 3-62 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.26 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (18164661..18165439)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (13990383..13991161)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR45104 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Peroxiredoxin 5 Neighboring gene well-rounded Neighboring gene cadmus

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    RNA cap binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA interference IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    gene silencing by miRNA IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    PubMed 
    mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    negative regulation of viral genome replication IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    primary miRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    production of siRNA involved in RNA interference IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    catalytic step 2 spliceosome HDA PubMed 
    nuclear cap binding complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    precatalytic spliceosome HDA PubMed 
    spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    cap binding protein 20
    Names
    CG12357-PA
    Cbp20-PA

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      18164661..18165439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_079672.3NP_524396.1  cap binding protein 20 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524396.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9V3L6
      UniProtKB/TrEMBL
      A0A1B2AJS4
      Related
      FBpp0082973, FBtr0083551
      Conserved Domains (2) summary
      COG0724
      Location:16117
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12240
      Location:32109
      RRM_NCBP2; RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins
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