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    C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Gallus gallus (chicken) ]

    Gene ID: 420575, updated on 27-Dec-2019

    Summary

    Symbol
    C1GALT1provided by CGNC
    Full Name
    core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1provided by CGNC
    Primary source
    CGNC:7413
    See related
    Ensembl:ENSGALG00000009752
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See C1GALT1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 2 NC_006089.5 (24688334..24702578)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 2 NC_006089.4 (24716583..24730952)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 2 NC_006089.3 (24823339..24831594)

    Chromosome 2 - NC_006089.5Genomic Context describing neighboring genes Neighboring gene tachykinin precursor 1 Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene collagen type XXVIII alpha 1 chain Neighboring gene meiosis regulator for oocyte development Neighboring gene microRNA 1685

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    O-glycan processing, core 1 IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    angiogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    kidney development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    integral component of membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
    Names
    core 1 O-glycan T-synthase
    core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1
    core 1 beta1,3-galactosyltransferase 1
    core 1 beta3-Gal-T1
    core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galac
    core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1
    NP_001012575.1
    XP_015136884.1
    XP_015136885.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012557.1NP_001012575.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

      See identical proteins and their annotated locations for NP_001012575.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ851683
      UniProtKB/Swiss-Prot
      Q5F3G7
      Conserved Domains (1) summary
      cl21608
      Location:108249
      Galactosyl_T; Galactosyltransferase

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006089.5 Reference GRCg6a Primary Assembly

      Range
      24688334..24702578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281399.2XP_015136885.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5F3G7
      Related
      ENSGALP00000015853.3, ENSGALT00000015869.5
      Conserved Domains (1) summary
      cl21608
      Location:108249
      Galactosyl_T; Galactosyltransferase
    2. XM_015281398.2XP_015136884.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

      Related
      ENSGALP00000067511.1, ENSGALT00000095257.1
      Conserved Domains (1) summary
      cl21608
      Location:114255
      Galactosyl_T; Galactosyltransferase
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