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    DDX6 DEAD-box helicase 6 [ Gallus gallus (chicken) ]

    Gene ID: 419783, updated on 2-Oct-2018

    Summary

    Symbol
    DDX6provided by CGNC
    Full Name
    DEAD-box helicase 6provided by CGNC
    Primary source
    CGNC:14491
    See related
    Ensembl:ENSGALG00000033064
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    RCK
    Orthologs

    Genomic context

    See DDX6 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 24 NC_006111.5 (5577179..5594309, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 24 NC_006111.4 (5547473..5564615, complement)

    Chromosome 24 - NC_006111.5Genomic Context describing neighboring genes Neighboring gene chromosome 11 open reading frame 88 Neighboring gene microRNA 34b Neighboring gene microRNA 34c Neighboring gene C-X-C motif chemokine receptor 5 Neighboring gene B-cell CLL/lymphoma 9-like Neighboring gene uncharacterized LOC112530273

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Decapping complex, organism-specific biosystem (from KEGG)
      Decapping complex, organism-specific biosystemStructural complex; Genetic information processing; RNA processing
    • Decapping complex, conserved biosystem (from KEGG)
      Decapping complex, conserved biosystemStructural complex; Genetic information processing; RNA processing
    • RNA degradation, organism-specific biosystem (from KEGG)
      RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
    • RNA degradation, conserved biosystem (from KEGG)
      RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cytoplasmic mRNA processing body assembly IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    stem cell population maintenance IEA
    Inferred from Electronic Annotation
    more info
     
    viral RNA genome packaging IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    P-body IEA
    Inferred from Electronic Annotation
    more info
     
    RISC complex IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    probable ATP-dependent RNA helicase DDX6
    Names
    ATP-dependent RNA helicase p54
    DEAD (Asp-Glu-Ala-Asp) box helicase 6
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
    NP_001268976.1
    XP_015153490.1
    XP_024998956.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282047.3NP_001268976.1  probable ATP-dependent RNA helicase DDX6

      See identical proteins and their annotated locations for NP_001268976.1

      Status: VALIDATED

      Source sequence(s)
      AADN04000117
      UniProtKB/Swiss-Prot
      Q5ZKB9
      Related
      ENSGALP00000046305.1, ENSGALT00000058124.1
      Conserved Domains (1) summary
      COG0513
      Location:80458
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006111.5 Reference GRCg6a Primary Assembly

      Range
      5577179..5594309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015298004.2XP_015153490.1  probable ATP-dependent RNA helicase DDX6 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZKB9
      Conserved Domains (1) summary
      COG0513
      Location:80458
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    2. XM_025143188.1XP_024998956.1  probable ATP-dependent RNA helicase DDX6 isoform X1

      Conserved Domains (1) summary
      COG0513
      Location:80458
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001006319.4: Suppressed sequence

      Description
      NM_001006319.4: This RefSeq was removed because currently there is insufficient support for the transcript structure.
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