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    nap1l1 nucleosome assembly protein 1 like 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 407956, updated on 20-Jun-2018

    Summary

    Official Symbol
    nap1l1provided by Xenbase
    Official Full Name
    nucleosome assembly protein 1 like 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-484197
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    nrp; nap1; nap1l; xNAP-1; xnap1l; xnap1l1; nap1l1-a; nap1l1-b
    Orthologs

    Genomic context

    See nap1l1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (51755699..51777073, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668234.1 (89811094..89832468, complement)

    Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene KRR1, small subunit (SSU) processome component, homolog Neighboring gene pleckstrin homology-like domain, family A, member 1 Neighboring gene uncharacterized LOC108646161 Neighboring gene Bardet-Biedl syndrome 10

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC53871, MGC76172, MGC146995

    General protein information

    Preferred Names
    nucleosome assembly protein 1-like 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001249.2NP_001001249.1  nucleosome assembly protein 1-like 1 isoform 1

      See identical proteins and their annotated locations for NP_001001249.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      BC068215, CX960191
      UniProtKB/Swiss-Prot
      Q28EB4
      Conserved Domains (1) summary
      pfam00956
      Location:86353
      NAP; Nucleosome assembly protein (NAP)
    2. NM_001015984.3NP_001015984.1  nucleosome assembly protein 1-like 1 isoform 2

      See identical proteins and their annotated locations for NP_001015984.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate in-frame exon compared to variant 1. The resulting protein (isoform 2) is longer compared to isoform 1.
      Source sequence(s)
      CR848343, CX960191
      UniProtKB/Swiss-Prot
      Q28EB4
      Conserved Domains (1) summary
      pfam00956
      Location:77344
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      51755699..51777073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012958789.1XP_012814243.1  nucleosome assembly protein 1-like 1 isoform X2

      Conserved Domains (1) summary
      pfam00956
      Location:77344
      NAP; Nucleosome assembly protein (NAP)
    2. XM_012958788.2XP_012814242.1  nucleosome assembly protein 1-like 1 isoform X1

      Conserved Domains (1) summary
      pfam00956
      Location:86353
      NAP; Nucleosome assembly protein (NAP)
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