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    plekha1a pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a [ Danio rerio (zebrafish) ]

    Gene ID: 406745, updated on 12-Aug-2018

    Summary

    Official Symbol
    plekha1aprovided by ZNC
    Official Full Name
    pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2780
    See related
    Ensembl:ENSDARG00000030064 Vega:OTTDARG00000020258
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fc34a05; fc57h12; plekha1; zgc:55676; wu:fc34a05; wu:fc57h12

    Genomic context

    See plekha1a in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (21887823..21913328)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (21867987..21893492)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene deleted in malignant brain tumors 1 protein-like Neighboring gene CUB and zona pellucida-like domains 1, tandem duplicate 1 Neighboring gene HtrA serine peptidase 1a Neighboring gene cysteine-rich protein 3 Neighboring gene solute carrier family 22 (organic anion transporter), member 7b, tandem duplicate 3

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    PDZ domain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    pleckstrin homology domain-containing family A member 1
    Names
    pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213436.1NP_998601.1  pleckstrin homology domain-containing family A member 1

      See identical proteins and their annotated locations for NP_998601.1

      Status: PROVISIONAL

      Source sequence(s)
      BC044452
      UniProtKB/TrEMBL
      Q7ZYX2
      Related
      ENSDARP00000133411.2, ENSDART00000165192.2
      Conserved Domains (3) summary
      cd13270
      Location:1118
      PH1_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, N-terminal repeat
      cd13271
      Location:184297
      PH2_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat
      pfam00169
      Location:191287
      PH; PH domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      21887823..21913328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158692.3XP_005158749.1  pleckstrin homology domain-containing family A member 1 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IG72
      Conserved Domains (3) summary
      cd13270
      Location:1118
      PH1_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, N-terminal repeat
      cd13271
      Location:184297
      PH2_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat
      pfam00169
      Location:191287
      PH; PH domain
    2. XM_009293023.3XP_009291298.1  pleckstrin homology domain-containing family A member 1 isoform X3

      See identical proteins and their annotated locations for XP_009291298.1

      Conserved Domains (3) summary
      cd13270
      Location:1118
      PH1_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, N-terminal repeat
      cd13271
      Location:184297
      PH2_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat
      pfam00169
      Location:191287
      PH; PH domain
    3. XM_009293024.3XP_009291299.1  pleckstrin homology domain-containing family A member 1 isoform X3

      See identical proteins and their annotated locations for XP_009291299.1

      Conserved Domains (3) summary
      cd13270
      Location:1118
      PH1_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, N-terminal repeat
      cd13271
      Location:184297
      PH2_TAPP1_2; Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat
      pfam00169
      Location:191287
      PH; PH domain
    4. XM_017351618.2XP_017207107.1  pleckstrin homology domain-containing family A member 1 isoform X1

      UniProtKB/TrEMBL
      E9QH37
      Related
      ENSDARP00000122375.1, OTTDARP00000020787, ENSDART00000131929.3

    RNA

    1. XR_222431.4 RNA Sequence

    2. XR_002455898.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394986.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      135393..160862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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