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    rps2 ribosomal protein S2 [ Danio rerio (zebrafish) ]

    Gene ID: 406565, updated on 1-Aug-2018

    Summary

    Official Symbol
    rps2provided by ZNC
    Official Full Name
    ribosomal protein S2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2454
    See related
    Ensembl:ENSDARG00000077291 Vega:OTTDARG00000019704
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    rps2e; fc94f01; zgc:85824; tdsubc_2h2; wu:fb10e01; wu:fc94f01; wu:fj09b04; ik:tdsubc_2h2; xx:tdsubc_2h2
    Orthologs

    Genomic context

    See rps2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (18398842..18403177)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (18249131..18253437)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2a Neighboring gene si:ch211-139g16.8 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 Neighboring gene glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S2
    Names
    ribosomal protein S2e

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213279.2NP_998444.1  40S ribosomal protein S2

      See identical proteins and their annotated locations for NP_998444.1

      Status: PROVISIONAL

      Source sequence(s)
      BC067645
      UniProtKB/TrEMBL
      Q6NWC3
      Related
      ENSDARP00000101605.1, ENSDART00000110842.3
      Conserved Domains (3) summary
      TIGR01020
      Location:40249
      uS5_euk_arch; ribosomal protein uS5, eukaryotic/archaeal form
      pfam00333
      Location:88152
      Ribosomal_S5; Ribosomal protein S5, N-terminal domain
      pfam03719
      Location:171238
      Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      18398842..18403177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163871.4XP_005163928.1  40S ribosomal protein S2 isoform X1

      See identical proteins and their annotated locations for XP_005163928.1

      UniProtKB/TrEMBL
      Q6NWC3
      Related
      ENSDARP00000117673.1, OTTDARP00000020087, ENSDART00000138107.3
      Conserved Domains (3) summary
      TIGR01020
      Location:40249
      uS5_euk_arch; ribosomal protein uS5, eukaryotic/archaeal form
      pfam00333
      Location:88152
      Ribosomal_S5; Ribosomal protein S5, N-terminal domain
      pfam03719
      Location:171238
      Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain
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