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    hnrnpk heterogeneous nuclear ribonucleoprotein K [ Danio rerio (zebrafish) ]

    Gene ID: 406267, updated on 14-Feb-2019

    Summary

    Official Symbol
    hnrnpkprovided by ZNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein Kprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1926
    See related
    Ensembl:ENSDARG00000018914
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    hnrpk; zgc:66162; wu:fb37h02; wu:fi34c04
    Orthologs

    Genomic context

    See hnrnpk in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (49745668..49766241, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (49756899..49777472, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (52006512..52027085, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene G kinase anchoring protein 1 Neighboring gene zgc:136564 Neighboring gene RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) Neighboring gene neurotrophic tyrosine kinase, receptor, type 2a

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    viral nucleocapsid IEA
    Inferred from Electronic Annotation
    more info
     
    virion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    heterogeneous nuclear ribonucleoprotein K

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212994.2NP_998159.2  heterogeneous nuclear ribonucleoprotein K

      See identical proteins and their annotated locations for NP_998159.2

      Status: VALIDATED

      Source sequence(s)
      BI704444, CR376792, CU682767, DR719329, EB912144
      UniProtKB/TrEMBL
      F1QWB4
      Related
      ENSDARP00000088691.3, ENSDART00000097919.5
      Conserved Domains (3) summary
      cd00105
      Location:355418
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:122183
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam08067
      Location:943
      ROKNT; ROKNT (NUC014) domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      49745668..49766241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167319.4XP_005167376.1  heterogeneous nuclear ribonucleoprotein K isoform X2

      Related
      ENSDARP00000146195.1, ENSDART00000189142.1
      Conserved Domains (3) summary
      cd00105
      Location:343406
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:122183
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam08067
      Location:943
      ROKNT; ROKNT (NUC014) domain
    2. XM_009304280.3XP_009302555.1  heterogeneous nuclear ribonucleoprotein K isoform X1

      See identical proteins and their annotated locations for XP_009302555.1

      UniProtKB/TrEMBL
      F1QWB4
      Conserved Domains (3) summary
      cd00105
      Location:355418
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:122183
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam08067
      Location:943
      ROKNT; ROKNT (NUC014) domain
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