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    Hyal4 hyaluronidase 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 404783, updated on 21-Aug-2018

    Summary

    Official Symbol
    Hyal4provided by RGD
    Official Full Name
    hyaluronidase 4provided by RGD
    Primary source
    RGD:1303194
    See related
    Ensembl:ENSRNOG00000007212
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Lung (RPKM 2.2), Testes (RPKM 0.8) and 2 other tissues See more

    Genomic context

    See Hyal4 in Genome Data Viewer
    Location:
    4q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (52147641..52166276)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (51916581..51935494)

    Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350678 Neighboring gene hyaluronoglucosaminidase 6 Neighboring gene sperm adhesion molecule 1 Neighboring gene hyaluronoglucosaminidase 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    hyalurononglucosaminidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    hyalurononglucosaminidase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    chondroitin sulfate catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    chondroitin sulfate catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    glycosaminoglycan catabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    hyaluronidase-4
    Names
    hyaluronoglucosaminidase 4
    NP_001094250.1
    XP_008761021.1
    XP_017448224.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100780.1NP_001094250.1  hyaluronidase-4

      See identical proteins and their annotated locations for NP_001094250.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473959
      UniProtKB/TrEMBL
      G3V6V8
      Related
      ENSRNOP00000009458.2, ENSRNOT00000009458.4
      Conserved Domains (1) summary
      pfam01630
      Location:41369
      Glyco_hydro_56; Hyaluronidase

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

      Range
      52147641..52166276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017592735.1XP_017448224.1  hyaluronidase-4 isoform X1

      UniProtKB/TrEMBL
      G3V6V8
      Related
      ENSRNOP00000072978.1, ENSRNOT00000084706.1
      Conserved Domains (1) summary
      pfam01630
      Location:41369
      Glyco_hydro_56; Hyaluronidase
    2. XM_008762799.2XP_008761021.1  hyaluronidase-4 isoform X1

      See identical proteins and their annotated locations for XP_008761021.1

      UniProtKB/TrEMBL
      G3V6V8
      Conserved Domains (1) summary
      pfam01630
      Location:41369
      Glyco_hydro_56; Hyaluronidase

    Alternate Rn_Celera

    Genomic

    1. AC_000072.1 Alternate Rn_Celera

      Range
      48419700..48438289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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