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    phox2a paired like homeobox 2A [ Danio rerio (zebrafish) ]

    Gene ID: 404602, updated on 1-Aug-2018

    Summary

    Official Symbol
    phox2aprovided by ZNC
    Official Full Name
    paired like homeobox 2Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-000223-14
    See related
    Ensembl:ENSDARG00000007406 Vega:OTTDARG00000040374
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    sou; arix; zgc:77364
    Orthologs

    Genomic context

    See phox2a in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (47440245..47449248)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (46976103..46984965)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase kinase 5-like Neighboring gene ClpB homolog, mitochondrial AAA ATPase chaperonin Neighboring gene inositol polyphosphate phosphatase-like 1a Neighboring gene uncharacterized LOC101884560 Neighboring gene SIK family kinase 3 Neighboring gene SID1 transmembrane family, member 2

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC77364

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    brain development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    locus ceruleus development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuron development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    noradrenergic neuron development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    paired mesoderm homeobox protein 2A
    Names
    aristaless homeobox
    soulless

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207070.2NP_996953.2  paired mesoderm homeobox protein 2A

      Status: VALIDATED

      Source sequence(s)
      CU633849
      Conserved Domains (1) summary
      pfam00046
      Location:96148
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      47440245..47449248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169636.4XP_005169693.1  paired mesoderm homeobox protein 2A isoform X1

      UniProtKB/TrEMBL
      F1RCT9
      Related
      ENSDARP00000013072.8, OTTDARP00000045369, ENSDART00000002384.10
      Conserved Domains (1) summary
      pfam00046
      Location:96148
      Homeobox; Homeobox domain
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