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    CILP cartilage intermediate layer protein [ Sus scrofa (pig) ]

    Gene ID: 397672, updated on 2-Oct-2018

    Summary

    Gene symbol
    CILP
    Gene description
    cartilage intermediate layer protein
    See related
    Ensembl:ENSSSCG00000004928
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Also known as
    NTPPH
    Expression
    Biased expression in subcutaneous adipose (RPKM 67.3), longissimus dorsi muscle (RPKM 25.2) and 2 other tissues See more
    Orthologs

    Genomic context

    See CILP in Genome Data Viewer
    Location:
    1; 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (163236864..163271222, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (180761767..180777652, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit Neighboring gene uncharacterized LOC106506879 Neighboring gene poly(ADP-ribose) polymerase family member 16 Neighboring gene immunoglobulin superfamily DCC subclass member 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Pathways from BioSystems

    General protein information

    Preferred Names
    cartilage intermediate layer protein 1
    Names
    CILP-1
    nucleotide pyrophosphohydrolase

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001348903.1NP_001335832.1  cartilage intermediate layer protein 1

      Status: VALIDATED

      Source sequence(s)
      AEMK02000004, U83114
      Related
      ENSSSCP00000005303.2, ENSSSCT00000005438.3
      Conserved Domains (4) summary
      smart00209
      Location:162211
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:64148
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:236294
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:319388
      Ig_3; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      163236864..163271222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021083365.1XP_020939024.1  cartilage intermediate layer protein 1 isoform X1

      Related
      ENSSSCP00000059189.1, ENSSSCT00000042024.1
      Conserved Domains (4) summary
      smart00209
      Location:162211
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:64148
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:236294
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:319388
      Ig_3; Immunoglobulin domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001164648.1: Suppressed sequence

      Description
      NM_001164648.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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