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    CD19 CD19 molecule [ Sus scrofa (pig) ]

    Gene ID: 397669, updated on 2-Oct-2018

    Summary

    Gene symbol
    CD19
    Gene description
    CD19 molecule
    See related
    Ensembl:ENSSSCG00000007807 Vega:OTTSUSG00000001715
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in spleen (RPKM 35.7) and mixtures (RPKM 4.6) See more
    Orthologs

    Genomic context

    See CD19 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (18592785..18601273)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (18778828..18787202)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene SH2B adaptor protein 1 Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 Neighboring gene rabaptin, RAB GTPase binding effector protein 2 Neighboring gene nuclear factor of activated T cells 2 interacting protein Neighboring gene sphingolipid transporter 1 (putative)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    B-lymphocyte antigen CD19
    Names
    B cell surface marker CD19

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214377.1NP_999542.1  B-lymphocyte antigen CD19 precursor

      See identical proteins and their annotated locations for NP_999542.1

      Status: PROVISIONAL

      Source sequence(s)
      AF466765
      UniProtKB/TrEMBL
      Q8SPI8
      Related
      OTTSUSP00000002645, OTTSUST00000003827
      Conserved Domains (3) summary
      smart00406
      Location:206277
      IGv; Immunoglobulin V-Type
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      18592785..18601273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021085877.1XP_020941536.1  B-lymphocyte antigen CD19 isoform X1

      Conserved Domains (2) summary
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain
    2. XM_013995589.2XP_013851043.1  B-lymphocyte antigen CD19 isoform X3

      Conserved Domains (3) summary
      smart00406
      Location:206277
      IGv; Immunoglobulin V-Type
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain
    3. XM_005662048.3XP_005662105.1  B-lymphocyte antigen CD19 isoform X5

      Conserved Domains (3) summary
      smart00406
      Location:206277
      IGv; Immunoglobulin V-Type
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain
    4. XM_021085878.1XP_020941537.1  B-lymphocyte antigen CD19 isoform X2

      Conserved Domains (2) summary
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain
    5. XM_013995590.2XP_013851044.1  B-lymphocyte antigen CD19 isoform X4

      UniProtKB/TrEMBL
      F1RFH7
      Related
      ENSSSCP00000008336.3, ENSSSCT00000008555.4
      Conserved Domains (3) summary
      smart00406
      Location:206277
      IGv; Immunoglobulin V-Type
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain
    6. XM_021085880.1XP_020941539.1  B-lymphocyte antigen CD19 isoform X7

      Conserved Domains (2) summary
      smart00410
      Location:196290
      IG_like; Immunoglobulin like
      cl11960
      Location:25126
      Ig; Immunoglobulin domain
    7. XM_021085879.1XP_020941538.1  B-lymphocyte antigen CD19 isoform X6

      Conserved Domains (1) summary
      smart00410
      Location:100194
      IG_like; Immunoglobulin like
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