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    CD86 CD86 molecule [ Sus scrofa (pig) ]

    Gene ID: 397441, updated on 2-Oct-2018

    Summary

    Gene symbol
    CD86
    Gene description
    CD86 molecule
    See related
    Ensembl:ENSSSCG00000011877 Vega:OTTSUSG00000001745
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in spleen (RPKM 20.5), lung (RPKM 9.9) and 4 other tissues See more
    Orthologs

    Genomic context

    See CD86 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (138427573..138504307, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (148055863..148130754, complement)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene U6 snRNA-associated Sm-like protein LSm5 pseudogene Neighboring gene calcium sensing receptor Neighboring gene immunoglobulin like domain containing receptor 1 Neighboring gene solute carrier family 15 member 2 Neighboring gene ELL associated factor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    T-lymphocyte activation antigen CD86
    Names
    co-stimulatory molecule B7-2
    costimulatory B-lymphocyte antigen B7-2
    costimulatory molecule

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214222.1NP_999387.1  T-lymphocyte activation antigen CD86 precursor

      See identical proteins and their annotated locations for NP_999387.1

      Status: PROVISIONAL

      Source sequence(s)
      L76099
      UniProtKB/TrEMBL
      O02838
      Related
      OTTSUSP00000004618, OTTSUST00000006139
      Conserved Domains (3) summary
      smart00406
      Location:29106
      IGv; Immunoglobulin V-Type
      smart00410
      Location:28107
      IG_like; Immunoglobulin like
      cl11960
      Location:129216
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      138427573..138504307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005654045.3XP_005654102.1  T-lymphocyte activation antigen CD86 isoform X6

      UniProtKB/TrEMBL
      F1SQ22
      Related
      ENSSSCP00000030569.2, ENSSSCT00000036378.2
      Conserved Domains (3) summary
      smart00406
      Location:41118
      IGv; Immunoglobulin V-Type
      smart00410
      Location:40119
      IG_like; Immunoglobulin like
      cl11960
      Location:141228
      Ig; Immunoglobulin domain
    2. XM_005654040.3XP_005654097.1  T-lymphocyte activation antigen CD86 isoform X1

      UniProtKB/TrEMBL
      K7GMU1
      Related
      ENSSSCP00000028828.2, ENSSSCT00000034076.2
      Conserved Domains (3) summary
      smart00406
      Location:41118
      IGv; Immunoglobulin V-Type
      smart00410
      Location:40119
      IG_like; Immunoglobulin like
      cl11960
      Location:141228
      Ig; Immunoglobulin domain
    3. XM_005654046.3XP_005654103.1  T-lymphocyte activation antigen CD86 isoform X7

      Related
      OTTSUSP00000002351
      Conserved Domains (3) summary
      smart00406
      Location:29106
      IGv; Immunoglobulin V-Type
      smart00410
      Location:28107
      IG_like; Immunoglobulin like
      cl11960
      Location:129216
      Ig; Immunoglobulin domain
    4. XM_005654041.3XP_005654098.1  T-lymphocyte activation antigen CD86 isoform X2

      Related
      OTTSUSP00000002350
      Conserved Domains (3) summary
      smart00406
      Location:36113
      IGv; Immunoglobulin V-Type
      smart00410
      Location:35114
      IG_like; Immunoglobulin like
      cl11960
      Location:136223
      Ig; Immunoglobulin domain
    5. XM_005654042.3XP_005654099.1  T-lymphocyte activation antigen CD86 isoform X3

      UniProtKB/TrEMBL
      K7GL47
      Related
      ENSSSCP00000028576.2, OTTSUSP00000002352, ENSSSCT00000034541.2
      Conserved Domains (3) summary
      smart00406
      Location:29106
      IGv; Immunoglobulin V-Type
      smart00410
      Location:28107
      IG_like; Immunoglobulin like
      cl11960
      Location:129216
      Ig; Immunoglobulin domain
    6. XM_005654044.3XP_005654101.1  T-lymphocyte activation antigen CD86 isoform X5

      Conserved Domains (3) summary
      smart00406
      Location:29106
      IGv; Immunoglobulin V-Type
      smart00410
      Location:28107
      IG_like; Immunoglobulin like
      cl11960
      Location:129216
      Ig; Immunoglobulin domain
    7. XM_005654043.3XP_005654100.1  T-lymphocyte activation antigen CD86 isoform X4

      Conserved Domains (3) summary
      smart00406
      Location:41118
      IGv; Immunoglobulin V-Type
      smart00410
      Location:40119
      IG_like; Immunoglobulin like
      cl11960
      Location:141228
      Ig; Immunoglobulin domain
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