Format

Send to:

Choose Destination
    • Showing Current items.

    DNASE2 deoxyribonuclease 2, lysosomal [ Sus scrofa (pig) ]

    Gene ID: 397398, updated on 2-Oct-2018

    Summary

    Gene symbol
    DNASE2
    Gene description
    deoxyribonuclease 2, lysosomal
    See related
    Ensembl:ENSSSCG00000013731
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in lung (RPKM 65.2), spleen (RPKM 44.3) and 6 other tissues See more
    Orthologs

    Genomic context

    See DNASE2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (66150071..66152857)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (66447511..66450524, complement)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene synaptonemal complex central element protein 2 Neighboring gene glutaryl-CoA dehydrogenase Neighboring gene Kruppel like factor 1 Neighboring gene microtubule associated serine/threonine kinase 1 Neighboring gene retbindin

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Lysosome, organism-specific biosystem (from KEGG)
      Lysosome, organism-specific biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...
    • Lysosome, conserved biosystem (from KEGG)
      Lysosome, conserved biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GO

    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    deoxyribonuclease-2-alpha
    Names
    DNase II alpha
    acid DNase
    deoxyribonuclease II alpha
    lysosomal DNase II
    NP_999361.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214196.1NP_999361.1  deoxyribonuclease-2-alpha precursor

      See identical proteins and their annotated locations for NP_999361.1

      Status: PROVISIONAL

      Source sequence(s)
      AF060221
      UniProtKB/Swiss-Prot
      O62855
      Related
      ENSSSCP00000014601.3, ENSSSCT00000015005.3
      Conserved Domains (2) summary
      pfam03265
      Location:21347
      DNase_II; Deoxyribonuclease II
      cl15239
      Location:18178
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      66150071..66152857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center