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    CD247 CD247 molecule [ Sus scrofa (pig) ]

    Gene ID: 397302, updated on 2-Oct-2018

    Summary

    Gene symbol
    CD247
    Gene description
    CD247 molecule
    See related
    Ensembl:ENSSSCG00000006309 Vega:OTTSUSG00000002429
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Also known as
    CD3Z
    Expression
    Broad expression in spleen (RPKM 33.3), subcutaneous adipose (RPKM 8.9) and 5 other tissues See more
    Orthologs

    Genomic context

    See CD247 in Genome Data Viewer
    Location:
    4; 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (83494266..83586887)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (91170039..91260282)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260300 Neighboring gene cellular repressor of E1A stimulated genes 1 Neighboring gene POU class 2 homeobox 1 Neighboring gene uncharacterized LOC106510105

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    T-cell surface glycoprotein CD3 zeta chain
    Names
    CD3 zeta chain
    T-cell receptor T3 zeta chain

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214155.2NP_999320.2  T-cell surface glycoprotein CD3 zeta chain precursor

      See identical proteins and their annotated locations for NP_999320.2

      Status: PROVISIONAL

      Source sequence(s)
      AB188403
      UniProtKB/TrEMBL
      Q589C1
      Related
      ENSSSCP00000046377.1, OTTSUSP00000003710, ENSSSCT00000048979.1, OTTSUST00000005046
      Conserved Domains (3) summary
      smart00077
      Location:6989
      ITAM; Immunoreceptor tyrosine-based activation motif
      pfam02189
      Location:141160
      ITAM; Immunoreceptor tyrosine-based activation motif
      pfam11628
      Location:2858
      TCR_zetazeta; T-cell surface glycoprotein CD3 zeta chain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      83494266..83586887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005663131.3XP_005663188.1  T-cell surface glycoprotein CD3 zeta chain isoform X1

      Related
      OTTSUSP00000003709
      Conserved Domains (3) summary
      smart00077
      Location:6989
      ITAM; Immunoreceptor tyrosine-based activation motif
      pfam02189
      Location:140159
      ITAM; Immunoreceptor tyrosine-based activation motif
      pfam11628
      Location:2858
      TCR_zetazeta; T-cell surface glycoprotein CD3 zeta chain

    RNA

    1. XR_002343035.1 RNA Sequence

    2. XR_303057.3 RNA Sequence

    3. XR_303056.3 RNA Sequence

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